Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FP568_RS10210 Genome accession   NZ_CP042219
Coordinates   2247998..2249371 (+) Length   457 a.a.
NCBI ID   WP_023874151.1    Uniprot ID   A0A378YAD7
Organism   Pandoraea pnomenusa strain TF-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242998..2254371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP568_RS10190 (FP568_10190) - 2243133..2244419 (+) 1287 WP_191240002.1 DUF1853 family protein -
  FP568_RS10195 (FP568_10195) thiD 2244438..2245271 (-) 834 WP_023596268.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FP568_RS10200 (FP568_10200) lplT 2245273..2246565 (-) 1293 WP_023596267.1 lysophospholipid transporter LplT -
  FP568_RS10205 (FP568_10205) alr 2246904..2247974 (+) 1071 WP_145863593.1 alanine racemase -
  FP568_RS10210 (FP568_10210) radA 2247998..2249371 (+) 1374 WP_023874151.1 DNA repair protein RadA Machinery gene
  FP568_RS10215 (FP568_10215) - 2249512..2251455 (-) 1944 WP_145863594.1 ATP-binding cassette domain-containing protein -
  FP568_RS10220 (FP568_10220) cls 2251604..2253031 (-) 1428 WP_145863595.1 cardiolipin synthase -
  FP568_RS10225 (FP568_10225) prmB 2253160..2254056 (-) 897 WP_023596262.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48164.34 Da        Isoelectric Point: 7.2033

>NTDB_id=376077 FP568_RS10210 WP_023874151.1 2247998..2249371(+) (radA) [Pandoraea pnomenusa strain TF-18]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETSTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=376077 FP568_RS10210 WP_023874151.1 2247998..2249371(+) (radA) [Pandoraea pnomenusa strain TF-18]
ATGGCCAAAGCCAAGACTGTCTATATCTGTACCGAGTGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAATGTCCCAACTG
CAACGGCTGGAATACGCTCGTCGAGTCGGTGGCCGAAACGTCGACCGGCCACCGGTACCAGTCGCTCGCCAAGAGCACGC
CGGTGCGCAAGCTCGCGCAGATCGAAGCGGCCGACGTGCCGCGATTTTCCAGCGGTGTGAGCGAATTCGACCGGGTGCTC
GGCGGCGGGCTCGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGAATCGGCAAGTCGACGCTGCTGCTTCAGTC
CCTGGCGCATCTGGCGCGCGAGCGCCGCGCGCTTTACGTGAGCGGCGAAGAGTCCGGCGCGCAGATCGCGCTGCGCGCGC
AGCGACTGGGCCTCGGTGCGGCGGGCGAGGGCGGCGGTGAGCTCGATCTGCTTGCCGAAATCCAGTTGGAGAAGATTCTC
GGCGCGATCGAATCGGAAAAGCCGGATGTCGTGGTGATCGATTCGATCCAGACCATTTACTCGGAAGCTCTCACCTCGGC
GCCCGGTTCGGTGGCCCAGGTGCGCGAGTGTGCGGCCCAACTCACACGCAGTGCGAAGCAAAGCGGCGTGACCGTCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAGCCTGGCCGGGCCACGCGTGCTTGAACACATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCCTATCGCCTCGTTCGCGCGTTCAAGAATCGATTCGGCGCGGTCAACGAACTGGGCGTTTT
CGCCATGACGGAAAAAGGGCTGCGCGGGGTGGCGAATCCGTCGGCCCTGTTCCTCTCGCAGCATGAGCAGAGCGTGCCGG
GCTCCTGCGTGCTGGTGACCCAGGAGGGCACCCGTCCGCTGCTCGTCGAAGTGCAGGCGCTGGTGGATACGGCGCAGGTG
CCGAATCCGCGTCGTCTGGCGGTGGGATTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTCATGCATCGTCACGCCGG
CATCGCCTGCTTCGATCAGGATGTGTTCCTCAATGCCGTGGGCGGTGTGAAGATTTCGGAGCCGGCGGCCGACCTGGCCG
TGCTGCTGGCGATCCACTCGTCGCTGCGCAACAAGCCCTTGCCGCGCGGCATCGTCGCGTTTGGCGAAGTCGGGCTGGCC
GGGGAAATCCGGCCGAGCCCGCGGGGGCAGGATCGTCTCAAGGAAGCCGCGAAGCTCGGCTTCTCGATTGCCATCATTCC
GAAGGCGAACGCGCCCAAACAACCCATCGACGGTCTTGAAGTGCATGCCGTCGACCGTCTGGAGCAGGCGATTTCGGTCG
TGGCCGGATTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YAD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.188

100

0.495
  radA Streptococcus pneumoniae Rx1

48.605

94.092

0.457
  radA Streptococcus pneumoniae D39

48.605

94.092

0.457
  radA Streptococcus pneumoniae R6

48.605

94.092

0.457
  radA Streptococcus pneumoniae TIGR4

48.605

94.092

0.457
  radA Streptococcus mitis SK321

48.605

94.092

0.457
  radA Streptococcus mitis NCTC 12261

48.605

94.092

0.457

Multiple sequence alignment