Detailed information NTG0376053

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HAP53_RS21500
• Genome accession: NZ_CP049979
• Coordinates: 4492176..4493168 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain IBS28
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4487176..4498168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAP53_RS21475 (HAP53_21470)	ygbN	4487831..4489195 (+)	1365	WP_000104439.1	GntP family transporter	-
HAP53_RS21480 (HAP53_21475)	-	4489234..4489470 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HAP53_RS21485 (HAP53_21480)	-	4489481..4490908 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HAP53_RS21490 (HAP53_21485)	-	4490908..4491501 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HAP53_RS21495 (HAP53_21490)	-	4491648..4492055 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
HAP53_RS21500 (HAP53_21495)	rpoS	4492176..4493168 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HAP53_RS21505 (HAP53_21500)	nlpD	4493231..4494325 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HAP53_RS21510 (HAP53_21505)	pcm	4494510..4495136 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HAP53_RS21515 (HAP53_21510)	surE	4495130..4495891 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HAP53_RS21520 (HAP53_21515)	truD	4495872..4496921 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HAP53_RS21525 (HAP53_21520)	ispF	4496918..4497397 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HAP53_RS21530 (HAP53_21525)	ispD	4497397..4498107 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=376053 HAP53_RS21500 WP_000081550.1 4492176..4493168(-) (rpoS) [Escherichia coli strain IBS28]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=376053 HAP53_RS21500 WP_000081550.1 4492176..4493168(-) (rpoS) [Escherichia coli strain IBS28]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715