Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HAP53_RS21205 Genome accession   NZ_CP049979
Coordinates   4436540..4437055 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain IBS28     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4431540..4442055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP53_RS21175 (HAP53_21170) ygaZ 4431939..4432676 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  HAP53_RS21180 (HAP53_21175) ygaH 4432666..4433001 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HAP53_RS21190 (HAP53_21185) emrR 4433092..4433622 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HAP53_RS21195 (HAP53_21190) emrA 4433749..4434921 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HAP53_RS21200 (HAP53_21195) emrB 4434938..4436476 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HAP53_RS21205 (HAP53_21200) luxS 4436540..4437055 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HAP53_RS21210 (HAP53_21205) gshA 4437205..4438761 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  HAP53_RS21215 (HAP53_21210) yqaA 4438834..4439262 (-) 429 WP_001287457.1 YqaA family protein -
  HAP53_RS21220 (HAP53_21215) yqaB 4439259..4439825 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HAP53_RS21250 (HAP53_21245) csrA 4441418..4441603 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=376050 HAP53_RS21205 WP_001130211.1 4436540..4437055(-) (luxS) [Escherichia coli strain IBS28]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=376050 HAP53_RS21205 WP_001130211.1 4436540..4437055(-) (luxS) [Escherichia coli strain IBS28]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731