Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | HAP53_RS18000 | Genome accession | NZ_CP049979 |
| Coordinates | 3745247..3745723 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186774.1 | Uniprot ID | - |
| Organism | Escherichia coli strain IBS28 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3740247..3750723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP53_RS17975 (HAP53_17975) | - | 3740414..3742930 (+) | 2517 | WP_042964013.1 | hypothetical protein | - |
| HAP53_RS17980 (HAP53_17980) | - | 3743006..3743461 (+) | 456 | WP_000581504.1 | IrmA family protein | - |
| HAP53_RS17985 (HAP53_17985) | - | 3743540..3743773 (+) | 234 | WP_001119729.1 | DUF905 family protein | - |
| HAP53_RS17990 (HAP53_17990) | - | 3743873..3744691 (+) | 819 | WP_001234620.1 | DUF932 domain-containing protein | - |
| HAP53_RS17995 (HAP53_17995) | - | 3744746..3745231 (+) | 486 | WP_000849582.1 | antirestriction protein | - |
| HAP53_RS18000 (HAP53_18000) | radC | 3745247..3745723 (+) | 477 | WP_001186774.1 | RadC family protein | Machinery gene |
| HAP53_RS18005 (HAP53_18005) | yeeT | 3745786..3746007 (+) | 222 | WP_000692318.1 | DUF987 domain-containing protein | - |
| HAP53_RS18010 (HAP53_18010) | cbeA | 3746170..3746538 (+) | 369 | WP_001278232.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| HAP53_RS18015 (HAP53_18015) | - | 3746628..3747005 (+) | 378 | WP_000854752.1 | TA system toxin CbtA family protein | - |
| HAP53_RS18020 (HAP53_18020) | - | 3747002..3747151 (+) | 150 | Protein_3545 | DUF5983 family protein | - |
| HAP53_RS18025 (HAP53_18025) | - | 3747251..3747331 (+) | 81 | Protein_3546 | hypothetical protein | - |
| HAP53_RS23635 | - | 3748147..3748518 (+) | 372 | WP_001295631.1 | IS110 family transposase | - |
| HAP53_RS18035 (HAP53_18035) | - | 3748677..3749156 (-) | 480 | Protein_3548 | IS3 family transposase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17661.27 Da Isoelectric Point: 7.2020
>NTDB_id=376040 HAP53_RS18000 WP_001186774.1 3745247..3745723(+) (radC) [Escherichia coli strain IBS28]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=376040 HAP53_RS18000 WP_001186774.1 3745247..3745723(+) (radC) [Escherichia coli strain IBS28]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |