Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FFH79_RS21370 Genome accession   NZ_CP042180
Coordinates   4531616..4532251 (-) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas sp. KBS0802     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4526616..4537251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH79_RS21340 (FFH79_021340) murB 4527713..4528732 (-) 1020 WP_049586861.1 UDP-N-acetylmuramate dehydrogenase -
  FFH79_RS21345 (FFH79_021345) - 4528729..4529193 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  FFH79_RS21350 (FFH79_021350) kdsB 4529193..4529957 (-) 765 WP_010952928.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FFH79_RS21355 (FFH79_021355) - 4529954..4530139 (-) 186 WP_003247142.1 Trm112 family protein -
  FFH79_RS21360 (FFH79_021360) lpxK 4530184..4531185 (-) 1002 WP_049586866.1 tetraacyldisaccharide 4'-kinase -
  FFH79_RS21365 (FFH79_021365) - 4531185..4531619 (-) 435 WP_010952926.1 biopolymer transporter ExbD -
  FFH79_RS21370 (FFH79_021370) exbB 4531616..4532251 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FFH79_RS21375 (FFH79_021375) comA 4532362..4534575 (-) 2214 WP_010952924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FFH79_RS21380 (FFH79_021380) - 4534718..4535224 (+) 507 Protein_4132 DUF2062 domain-containing protein -
  FFH79_RS21385 (FFH79_021385) - 4535234..4536013 (-) 780 WP_010952923.1 ABC transporter permease -
  FFH79_RS21390 (FFH79_021390) - 4536010..4536942 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=375976 FFH79_RS21370 WP_026031862.1 4531616..4532251(-) (exbB) [Pseudomonas sp. KBS0802]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=375976 FFH79_RS21370 WP_026031862.1 4531616..4532251(-) (exbB) [Pseudomonas sp. KBS0802]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGTCTGCTGGGCACCGTGCTAGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment