Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9448_RS20475 Genome accession   NZ_CP049967
Coordinates   4204711..4205226 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain ARL09/232     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4199711..4210226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9448_RS20430 (G9448_20415) csrA 4200298..4200483 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G9448_RS20460 (G9448_20445) yqaB 4201941..4202507 (+) 567 WP_000273305.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9448_RS20465 (G9448_20450) yqaA 4202504..4202932 (+) 429 WP_001287457.1 YqaA family protein -
  G9448_RS20470 (G9448_20455) gshA 4203005..4204561 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  G9448_RS20475 (G9448_20460) luxS 4204711..4205226 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  G9448_RS20480 (G9448_20465) emrB 4205290..4206828 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9448_RS20485 (G9448_20470) emrA 4206845..4208017 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9448_RS20490 (G9448_20475) emrR 4208144..4208674 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9448_RS20495 (G9448_20485) ygaH 4208765..4209100 (-) 336 WP_000119767.1 L-valine transporter subunit YgaH -
  G9448_RS20500 (G9448_20490) ygaZ 4209090..4209827 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=375971 G9448_RS20475 WP_001130210.1 4204711..4205226(+) (luxS) [Escherichia coli strain ARL09/232]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=375971 G9448_RS20475 WP_001130210.1 4204711..4205226(+) (luxS) [Escherichia coli strain ARL09/232]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737