Detailed information NTG0375968

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G9448_RS20180
• Genome accession: NZ_CP049967
• Coordinates: 4148832..4149824 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ARL09/232
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4143832..4154824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9448_RS20150 (G9448_20135)	ispD	4143893..4144603 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G9448_RS20155 (G9448_20140)	ispF	4144603..4145082 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G9448_RS20160 (G9448_20145)	truD	4145079..4146128 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G9448_RS20165 (G9448_20150)	surE	4146109..4146870 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G9448_RS20170 (G9448_20155)	pcm	4146864..4147490 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G9448_RS20175 (G9448_20160)	nlpD	4147675..4148769 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
G9448_RS20180 (G9448_20165)	rpoS	4148832..4149824 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G9448_RS20185 (G9448_20170)	-	4149945..4150352 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
G9448_RS20190 (G9448_20175)	-	4150499..4151092 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
G9448_RS20195 (G9448_20180)	-	4151092..4152518 (+)	1427	Protein_3980	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
G9448_RS20200 (G9448_20185)	-	4152529..4152765 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
G9448_RS20205 (G9448_20190)	ygbN	4152804..4154168 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=375968 G9448_RS20180 WP_000081550.1 4148832..4149824(+) (rpoS) [Escherichia coli strain ARL09/232]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=375968 G9448_RS20180 WP_000081550.1 4148832..4149824(+) (rpoS) [Escherichia coli strain ARL09/232]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715