Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FFI87_RS14680 Genome accession   NZ_CP042177
Coordinates   3085322..3086827 (+) Length   501 a.a.
NCBI ID   WP_138847138.1    Uniprot ID   -
Organism   Burkholderia sp. KBS0801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3080322..3091827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFI87_RS14655 (FFI87_014660) kdsD 3081555..3082538 (+) 984 WP_006752621.1 arabinose 5-phosphate isomerase KdsD -
  FFI87_RS14660 (FFI87_014665) - 3082538..3083074 (+) 537 WP_011657961.1 KdsC family phosphatase -
  FFI87_RS14665 (FFI87_014670) lptC 3083078..3083692 (+) 615 WP_138847139.1 LPS export ABC transporter periplasmic protein LptC -
  FFI87_RS14670 (FFI87_014675) lptA 3083713..3084378 (+) 666 WP_011657963.1 lipopolysaccharide transport periplasmic protein LptA -
  FFI87_RS14675 (FFI87_014680) lptB 3084375..3085151 (+) 777 WP_006752625.1 LPS export ABC transporter ATP-binding protein -
  FFI87_RS14680 (FFI87_014685) rpoN/rpoN1 3085322..3086827 (+) 1506 WP_138847138.1 RNA polymerase factor sigma-54 Machinery gene
  FFI87_RS14685 (FFI87_014690) hpf 3086985..3087344 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FFI87_RS14690 (FFI87_014695) - 3087514..3088053 (+) 540 WP_006752627.1 PTS sugar transporter subunit IIA -
  FFI87_RS14695 (FFI87_014700) hprK 3088183..3089151 (+) 969 WP_010090664.1 HPr(Ser) kinase/phosphatase -
  FFI87_RS14700 (FFI87_014705) rapZ 3089227..3090135 (+) 909 WP_041489859.1 RNase adapter RapZ -
  FFI87_RS14705 (FFI87_014710) - 3090162..3090797 (+) 636 WP_138847137.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54820.96 Da        Isoelectric Point: 4.8795

>NTDB_id=375963 FFI87_RS14680 WP_138847138.1 3085322..3086827(+) (rpoN/rpoN1) [Burkholderia sp. KBS0801]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENEDEWITSPLRVASDGSLIAQGPSGQNIEPGP
ANGSSPSSERTERDEPAGADEYDGYGSGDAGDGPQWNLDEYGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRMTQASP
RDRALVMFLIESLDDDGYLTASLDEVLSDLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=375963 FFI87_RS14680 WP_138847138.1 3085322..3086827(+) (rpoN/rpoN1) [Burkholderia sp. KBS0801]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACACCTGGCGCTGACCCCGCAACTGCAGCAGTCGATCCGGCTCCTGCA
ACTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAAAATCCGTTGCTCGAAAACGAAGACGAATGGA
TCACGAGTCCGCTGCGTGTCGCGTCGGACGGATCGCTGATCGCACAGGGGCCTTCCGGACAGAACATCGAGCCGGGCCCC
GCGAACGGCAGCAGCCCGTCGAGCGAGCGCACCGAGCGCGACGAGCCGGCCGGCGCCGACGAATACGACGGCTACGGGTC
GGGCGACGCCGGCGACGGCCCGCAGTGGAATCTGGACGAGTACGGCCGCTCGAGCGGCGCGTCGGACGATGACGACCTCC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCATGACGCAGGCCAGCCCG
CGCGATCGCGCACTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
CTCCGACCTGCCGCCGGAACTGGAAGTCGACTGCGACGAACTGAATGCTGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGGGTCGGGGCCCGCTCGGCCTCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCCACCCGCACGCTC
GCACTGGAGATCGTGTCGCAGCACCTCGAGCTGCTCGCGGCGCGCGACTTCACGCGGCTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCAGGCGCCGCGTACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAACTCAATCCTGAAGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGGTCGCTCAAGCAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCCATTGTCG
AACGTCAAAAGAATTTCTTCGCGCATGGTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACAGGCAAGTACATGCTGACCCCGTTCGGTACACTGGAATTCAAGTACTT
CTTCGGGTCACACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTTGCGCGC
CGCACGGTTGCCAAGTATCGCGAAGCCCTCAAAATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.317

100

0.689

Multiple sequence alignment