Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFI87_RS10375 Genome accession   NZ_CP042177
Coordinates   2191219..2192595 (-) Length   458 a.a.
NCBI ID   WP_012364148.1    Uniprot ID   B1YSI5
Organism   Burkholderia sp. KBS0801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2186219..2197595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFI87_RS10355 (FFI87_010355) cls 2186508..2187947 (+) 1440 WP_138847515.1 cardiolipin synthase -
  FFI87_RS10360 (FFI87_010360) - 2188077..2188556 (-) 480 WP_138847514.1 glutathione peroxidase -
  FFI87_RS10365 (FFI87_010365) - 2188693..2190624 (+) 1932 WP_138847513.1 ATP-binding cassette domain-containing protein -
  FFI87_RS10370 (FFI87_010370) - 2190804..2191070 (-) 267 WP_006754544.1 DUF2866 domain-containing protein -
  FFI87_RS10375 (FFI87_010375) radA 2191219..2192595 (-) 1377 WP_012364148.1 DNA repair protein RadA Machinery gene
  FFI87_RS10380 (FFI87_010380) alr 2192607..2193677 (-) 1071 WP_012364149.1 alanine racemase -
  FFI87_RS10385 (FFI87_010385) lplT 2193896..2195203 (+) 1308 WP_012364150.1 lysophospholipid transporter LplT -
  FFI87_RS10390 (FFI87_010390) thiD 2195262..2196071 (+) 810 WP_138847512.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FFI87_RS10395 (FFI87_010395) - 2196090..2197049 (-) 960 WP_138847511.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48804.25 Da        Isoelectric Point: 6.9501

>NTDB_id=375959 FFI87_RS10375 WP_012364148.1 2191219..2192595(-) (radA) [Burkholderia sp. KBS0801]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIANERRALYISGEESAAQIALRAQRLALLDGGAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADVAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=375959 FFI87_RS10375 WP_012364148.1 2191219..2192595(-) (radA) [Burkholderia sp. KBS0801]
GTGGCGAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAACACCCTCGTCGAATCGGTTGCCGAGTCGCCGGCCGCCCATCGCTTCCAGTCGCTCGCGAAGCGGGCGC
CGGTGCAGCGGCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGCGGGCTGGTGCCGGGAGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAACGAGCGGCGCGCACTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGACGGCGGCGCGCCGGCGGCCGAGCTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTCGCCGTCATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTGACGTCGGC
GCCCGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTCGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACACCCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCGG
GTTCCTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGTTTCGACCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCACCGAACCGGCCGCTGACGTCGCCG
TGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGCTTGATCGTATTCGGCGAGGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGTGGTCAGGAACGGCTGCGCGAGGCCGCGAAGCTCGGCTTCACGGCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGGATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-451)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1YSI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.493
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467

Multiple sequence alignment