Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFJ24_RS23310 Genome accession   NZ_CP042171
Coordinates   5735889..5737265 (-) Length   458 a.a.
NCBI ID   WP_138819510.1    Uniprot ID   -
Organism   Pedobacter sp. KBS0701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5730889..5742265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFJ24_RS23290 (FFJ24_023290) - 5731248..5732543 (-) 1296 WP_138819507.1 voltage-gated chloride channel family protein -
  FFJ24_RS23295 (FFJ24_023295) - 5732690..5733655 (+) 966 WP_138819508.1 tryptophan 2,3-dioxygenase family protein -
  FFJ24_RS23300 (FFJ24_023300) - 5733803..5734867 (+) 1065 WP_138819509.1 branched-chain amino acid aminotransferase -
  FFJ24_RS23305 (FFJ24_023305) - 5735104..5735568 (-) 465 WP_210419415.1 DUF4920 domain-containing protein -
  FFJ24_RS23310 (FFJ24_023310) radA 5735889..5737265 (-) 1377 WP_138819510.1 DNA repair protein RadA Machinery gene
  FFJ24_RS23315 (FFJ24_023315) - 5737405..5738955 (-) 1551 WP_138819511.1 Rne/Rng family ribonuclease -
  FFJ24_RS23320 (FFJ24_023320) - 5739235..5740113 (-) 879 WP_138819512.1 M48 family metallopeptidase -
  FFJ24_RS23325 (FFJ24_023325) - 5740124..5740426 (-) 303 WP_055909222.1 HU family DNA-binding protein -
  FFJ24_RS23330 (FFJ24_023330) mutY 5740596..5741657 (+) 1062 WP_138819513.1 A/G-specific adenine glycosylase -
  FFJ24_RS23335 (FFJ24_023335) - 5741712..5742149 (+) 438 WP_090503303.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50240.66 Da        Isoelectric Point: 5.9809

>NTDB_id=375899 FFJ24_RS23310 WP_138819510.1 5735889..5737265(-) (radA) [Pedobacter sp. KBS0701]
MAKSKTAYFCQSCGYESAKWLGKCPSCNQWNTFVEEIVEKSPASVPTWKNDTSGRKLSKPSKVDEIQSSTERRILTGDKE
LDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNIKGKKLLYISGEESEQQIKMRAERIQENPSSNCYILTETSTQNIF
KQIEILEPEILVVDSIQTLHSTHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSSAAY
GTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAVLIAIISSHQDIAVSSKNCFAAEVGLS
GEIRAVNRIEQRIAEADKLGFETIYISKYNLKGIAIEKYNLEIKAVSKIEEVFGLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=375899 FFJ24_RS23310 WP_138819510.1 5735889..5737265(-) (radA) [Pedobacter sp. KBS0701]
TTGGCAAAATCAAAAACCGCATATTTCTGTCAGAGCTGTGGCTACGAATCGGCAAAATGGCTGGGCAAATGTCCATCCTG
TAACCAATGGAATACCTTTGTGGAGGAAATTGTTGAGAAGAGCCCCGCATCAGTCCCAACCTGGAAAAACGATACATCTG
GCCGCAAATTAAGTAAACCGAGCAAGGTGGATGAAATCCAATCGTCAACCGAGCGGAGAATATTAACGGGCGACAAAGAA
CTTGACCGTGTTTTAGGCGGCGGTTTGGTAGAAGGATCTTTAGTATTGATTGGCGGTGAACCAGGTATCGGAAAATCGAC
CTTAATGTTACAGTTAGCCTTAAATATAAAAGGGAAAAAGTTATTGTATATTTCGGGAGAAGAGAGCGAGCAGCAGATTA
AAATGCGGGCAGAGCGAATCCAGGAAAATCCATCTTCAAACTGTTATATTTTAACGGAGACCTCTACACAGAACATTTTT
AAACAGATCGAAATTTTAGAACCAGAGATTTTGGTGGTCGATTCTATACAGACGCTACATTCTACCCATATCGATTCAAC
TCCAGGCAGTGTATCACAGGTAAGGGAATGTACAGCCGAATTATTGCGTTTTGCAAAAGAAACCGGCGTACCAGTTTTCC
TTATTGGCCATATCACTAAAGATGGTGCCATTGCAGGGCCGAAAATACTCGAACACATGGTTGACACGGTTTTGCAATTT
GAAGGCGACAGACATCATGTTTACCGCATTTTACGGTCAATTAAGAATCGCTTTGGAGCTGCTGCAGAATTGGGTATTTA
CGAAATGCAGGGCAGTGGCTTAAGAGAGGTCTCCAACCCCTCAGAGATCTTGCTTTCACAGCGCGATGAAGAATTAAGCG
GAATTGCCATTGCCGCAACCCTAGAAGGCGCAAGACCAATGTTGATTGAAACACAAGCCTTGGTGAGTTCGGCCGCCTAC
GGAACCCCTCAACGCTCCGCAACTGGTTTTGATACCAAAAGAATGAATATGCTCTTAGCTGTTTTAGAAAAACGATGTGG
CTTCAGGTTAAGCACACAAGATGTTTTCTTAAATATTGCCGGCGGAATCAGGGTAGAAGACCCTGCAATTGATCTGGCTG
TGTTAATCGCCATTATATCATCGCATCAGGATATTGCCGTGTCTTCCAAAAATTGCTTCGCTGCCGAGGTAGGTTTATCA
GGAGAAATAAGAGCAGTAAACAGAATCGAACAGCGTATTGCTGAAGCAGATAAATTGGGTTTCGAAACCATTTATATCTC
TAAATACAATTTAAAAGGTATTGCCATAGAAAAATACAACCTTGAGATTAAAGCTGTAAGTAAAATAGAAGAAGTATTCG
GTCTTGTTTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.061

100

0.524
  radA Streptococcus pneumoniae Rx1

50

100

0.5
  radA Streptococcus pneumoniae D39

50

100

0.5
  radA Streptococcus pneumoniae R6

50

100

0.5
  radA Streptococcus pneumoniae TIGR4

50

100

0.5
  radA Streptococcus mitis NCTC 12261

50

100

0.5
  radA Streptococcus mitis SK321

49.782

100

0.498

Multiple sequence alignment