Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9448_RS00485 Genome accession   NZ_CP049967
Coordinates   94518..95945 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain ARL09/232     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89518..100945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9448_RS00450 (G9448_00450) hisL 90102..90152 (-) 51 WP_001364200.1 his operon leader peptide -
  G9448_RS00455 (G9448_00455) yefM 90435..90686 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  G9448_RS00460 (G9448_00460) yoeB 90683..90937 (+) 255 WP_106631568.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  G9448_RS00465 (G9448_00465) yeeZ 91020..91844 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  G9448_RS00470 (G9448_00470) yeeY 91890..92819 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9448_RS00475 (G9448_00475) yoeI 93034..93096 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9448_RS00480 (G9448_00480) plaP 93086..94444 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G9448_RS00485 (G9448_00485) sbcB 94518..95945 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  G9448_RS00490 (G9448_00490) dacD 96154..97320 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9448_RS00495 (G9448_00495) sbmC 97439..97912 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  G9448_RS00500 (G9448_00500) yeeA 98110..99168 (+) 1059 Protein_99 FUSC family protein -
  G9448_RS00505 (G9448_00505) tmaR 99340..99669 (+) 330 WP_000450409.1 DUF496 family protein -
  G9448_RS26745 - 99770..100093 (-) 324 WP_352145865.1 EutP/PduV family microcompartment system protein -
  G9448_RS26335 - 100072..100152 (+) 81 WP_023441679.1 hypothetical protein -
  G9448_RS00520 (G9448_00520) - 100441..100521 (-) 81 Protein_103 hypothetical protein -
  G9448_RS00525 (G9448_00525) yeeW 100567..100761 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=375899 G9448_RS00485 WP_000980607.1 94518..95945(-) (sbcB) [Escherichia coli strain ARL09/232]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=375899 G9448_RS00485 WP_000980607.1 94518..95945(-) (sbcB) [Escherichia coli strain ARL09/232]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment