Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B0M43_RS04140 Genome accession   NZ_CP042170
Coordinates   906253..907614 (+) Length   453 a.a.
NCBI ID   WP_078006746.1    Uniprot ID   A0A1S8ZZR5
Organism   Flavobacterium sp. KBS0721     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901253..912614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0M43_RS04120 (B0M43_0004120) - 902591..903397 (-) 807 WP_056248169.1 glycogen/starch synthase -
  B0M43_RS04125 (B0M43_0004125) panC 903476..904354 (+) 879 WP_065451967.1 pantoate--beta-alanine ligase -
  B0M43_RS04130 (B0M43_0004130) panD 904369..904719 (+) 351 WP_026727479.1 aspartate 1-decarboxylase -
  B0M43_RS04135 (B0M43_0004135) - 905099..906253 (+) 1155 WP_078006747.1 alpha/beta hydrolase -
  B0M43_RS04140 (B0M43_0004140) radA 906253..907614 (+) 1362 WP_078006746.1 DNA repair protein RadA Machinery gene
  B0M43_RS04145 (B0M43_0004145) - 907704..908015 (-) 312 WP_123921776.1 DUF6252 family protein -
  B0M43_RS04150 (B0M43_0004150) - 908436..910400 (+) 1965 WP_078006744.1 transglycosylase domain-containing protein -
  B0M43_RS04155 (B0M43_0004155) - 910653..911402 (-) 750 WP_065451962.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49877.45 Da        Isoelectric Point: 6.6483

>NTDB_id=375883 B0M43_RS04140 WP_078006746.1 906253..907614(+) (radA) [Flavobacterium sp. KBS0721]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQEKVAWKSEPTPTGKAPRPLKINEIDSTQEIRMDTTDREL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVSNPSEILISHKDEEMSGTAIATTMEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVTKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFTTIFVSKYNKIALKNPGIKIELVAKIEDVAGILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=375883 B0M43_RS04140 WP_078006746.1 906253..907614(+) (radA) [Flavobacterium sp. KBS0721]
ATGTCTAAAGTTAAAACTTCCTTTTTTTGCCAGAACTGCGGCACCCAATACGCCAAATGGCAAGGACAATGCAATGCCTG
CAAAGAATGGAATACTATTGCTGAAGAAATCATTCAGAAACAGGAAAAAGTAGCCTGGAAAAGCGAACCTACTCCAACTG
GAAAAGCTCCACGCCCATTAAAAATTAATGAGATCGACTCGACTCAGGAAATTCGTATGGATACTACTGATAGGGAATTG
AACCGCGTTTTGGGTGGCGGAATTGTTCCCGGATCTTTGACACTTTTAGGCGGTGAACCCGGAATTGGAAAGAGTACACT
TTTGCTTCAAATCTCATTAAAATTACCTTATAAAACTTTATATGTTTCCGGTGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCCGAAAGAATCACGCCCAATAGTGACAATTGCTATATTTTGACGGAAACGAAAACGCAGAATATCTTCAAACAAATT
GAAGCGATTCAGCCGGAAATTGTCATTATCGACTCGATTCAGACTTTGCATACGGATTATATTGAATCTACAGCCGGAAG
TATTTCTCAGATTAGAGAAACGACTGCTGAATTGATCAAATTTGCCAAAGAAACTAATATTCCGGTTATTTTAATCGGAC
ATATTACGAAAGACGGAAACATCGCGGGACCAAAAATTCTGGAACATATGGTTGATACCGTTTTGCAATTTGAAGGCGAT
CGAAATCACGTTTACCGAATTTTGCGTTCGCTAAAAAACCGTTTTGGTTCTACTGCCGAATTAGGAATTTATGAAATGTT
AGGAAGCGGTTTACGCGAAGTAAGCAATCCTTCAGAAATATTGATTTCGCACAAAGACGAAGAAATGTCCGGAACTGCCA
TTGCCACAACTATGGAAGGCATGCGTCCCCTGATGATCGAAATACAATCGTTGGTAAGTACTGCAGTTTATGGAACGCCA
CAACGTAGCACAACAGGATATAATGCTAAAAGACTCAACATGATTTTGGCTGTTTTAGAAAAAAGAGCCGGATTTCGTTT
AGGAGCAAAAGATGTCTTTTTGAACGTAACCGGAGGAATTTCTGTTGATGATCCCGCAATTGACCTTGCTGTTGTTGCTG
CTATTTTATCTTCAAACGAAGATATTCCGGTAACAAAAGGGTTCTGTTTTGCAGGCGAAGTTGGACTTTCGGGAGAAATT
CGTCCTGTAAATCGTGTCGATCAAAGAATTCAGGAAGCCGAAAAATTAGGTTTCACTACTATTTTTGTATCGAAATATAA
TAAAATTGCCTTAAAAAATCCTGGAATCAAAATTGAACTTGTTGCCAAAATTGAAGATGTAGCCGGTATTTTATTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

AAA domain (AAA_25)

(65-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S8ZZR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.234

100

0.497
  radA Streptococcus mitis NCTC 12261

49.123

100

0.494
  radA Streptococcus pneumoniae Rx1

49.123

100

0.494
  radA Streptococcus pneumoniae TIGR4

49.123

100

0.494
  radA Streptococcus pneumoniae D39

49.123

100

0.494
  radA Streptococcus pneumoniae R6

49.123

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

48.451

99.779

0.483

Multiple sequence alignment