Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9V97_RS22285 Genome accession   NZ_CP049936
Coordinates   4720470..4721897 (-) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain JL05     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4715470..4726897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9V97_RS22255 (G9V97_22250) yeeZ 4715525..4716349 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  G9V97_RS22260 (G9V97_22255) yeeY 4716395..4717324 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9V97_RS22265 (G9V97_22260) yoeI 4717539..4717601 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9V97_RS22270 (G9V97_22265) plaP 4717591..4718949 (+) 1359 WP_000019201.1 putrescine/proton symporter PlaP -
  G9V97_RS22275 (G9V97_22270) tsuA 4719128..4720186 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  G9V97_RS22280 (G9V97_22275) tsuB 4720200..4720427 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G9V97_RS22285 (G9V97_22280) sbcB 4720470..4721897 (-) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  G9V97_RS22290 (G9V97_22285) dacD 4722106..4723272 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9V97_RS22295 (G9V97_22290) sbmC 4723391..4723864 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  G9V97_RS22300 (G9V97_22295) yeeA 4724062..4725120 (+) 1059 WP_001200891.1 FUSC family protein -
  G9V97_RS22305 (G9V97_22300) tmaR 4725292..4725621 (+) 330 WP_000450409.1 DUF496 family protein -
  G9V97_RS22310 (G9V97_22305) - 4725722..4725907 (-) 186 Protein_4402 EutP/PduV family microcompartment system protein -
  G9V97_RS22315 (G9V97_22310) - 4725958..4726104 (+) 147 Protein_4403 transposase domain-containing protein -
  G9V97_RS22320 (G9V97_22315) - 4726393..4726473 (-) 81 Protein_4404 hypothetical protein -
  G9V97_RS22325 (G9V97_22320) yeeW 4726519..4726713 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=375795 G9V97_RS22285 WP_001402309.1 4720470..4721897(-) (sbcB) [Escherichia coli strain JL05]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=375795 G9V97_RS22285 WP_001402309.1 4720470..4721897(-) (sbcB) [Escherichia coli strain JL05]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579