Detailed information NTG0375783

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G9V97_RS18550
• Genome accession: NZ_CP049936
• Coordinates: 3929326..3930318 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain JL05
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3924326..3935318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9V97_RS18520 (G9V97_18515)	ispD	3924387..3925097 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G9V97_RS18525 (G9V97_18520)	ispF	3925097..3925576 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G9V97_RS18530 (G9V97_18525)	truD	3925573..3926622 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G9V97_RS18535 (G9V97_18530)	surE	3926603..3927364 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G9V97_RS18540 (G9V97_18535)	pcm	3927358..3927984 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G9V97_RS18545 (G9V97_18540)	nlpD	3928169..3929263 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
G9V97_RS18550 (G9V97_18545)	rpoS	3929326..3930318 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G9V97_RS18555 (G9V97_18550)	-	3930439..3930846 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
G9V97_RS18560 (G9V97_18555)	-	3930993..3931586 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
G9V97_RS18565 (G9V97_18560)	-	3931586..3933013 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
G9V97_RS18570 (G9V97_18565)	-	3933024..3933260 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
G9V97_RS18575 (G9V97_18570)	ygbN	3933299..3934663 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=375783 G9V97_RS18550 WP_000081550.1 3929326..3930318(+) (rpoS) [Escherichia coli strain JL05]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=375783 G9V97_RS18550 WP_000081550.1 3929326..3930318(+) (rpoS) [Escherichia coli strain JL05]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715