Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPV225_RS05675 Genome accession   NC_017355
Coordinates   1199922..1200971 (+) Length   349 a.a.
NCBI ID   WP_000115444.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194922..1205971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS05660 (HPV225_1216) - 1195496..1197313 (+) 1818 WP_000926144.1 hypothetical protein -
  HPV225_RS05665 (HPV225_1217) asd 1197505..1198545 (-) 1041 WP_000860921.1 aspartate-semialdehyde dehydrogenase -
  HPV225_RS05670 (HPV225_1218) hisS 1198532..1199860 (-) 1329 WP_000632548.1 histidine--tRNA ligase -
  HPV225_RS05675 (HPV225_1219) waaF 1199922..1200971 (+) 1050 WP_000115444.1 lipopolysaccharide heptosyltransferase II Regulator
  HPV225_RS05680 (HPV225_1220) - 1201164..1201382 (-) 219 WP_000744170.1 hypothetical protein -
  HPV225_RS05685 (HPV225_1222) fusA 1201920..1203998 (-) 2079 WP_000101850.1 elongation factor G -
  HPV225_RS05690 (HPV225_1223) rpsG 1204010..1204477 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPV225_RS05695 (HPV225_1224) rpsL 1204493..1204900 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39521.39 Da        Isoelectric Point: 9.6799

>NTDB_id=37570 HPV225_RS05675 WP_000115444.1 1199922..1200971(+) (waaF) [Helicobacter pylori v225d]
MSVNAPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGHCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLICSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37570 HPV225_RS05675 WP_000115444.1 1199922..1200971(+) (waaF) [Helicobacter pylori v225d]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCATTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGTTATGGGAG
TGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTGTTGAACCACCATTTAATCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCCTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment