Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FP484_RS10780 Genome accession   NZ_CP042107
Coordinates   2164808..2165254 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B8-13D     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2159808..2170254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP484_RS10750 (FP484_10750) gcvPA 2160734..2162080 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FP484_RS10755 (FP484_10755) gcvT 2162100..2163191 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FP484_RS10760 (FP484_10760) - 2163350..2163874 (-) 525 WP_001015120.1 shikimate kinase -
  FP484_RS10765 (FP484_10765) - 2163864..2164010 (-) 147 WP_001792109.1 hypothetical protein -
  FP484_RS10770 (FP484_10770) comGF 2164107..2164604 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  FP484_RS10775 (FP484_10775) comGE 2164522..2164821 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  FP484_RS10780 (FP484_10780) comGD 2164808..2165254 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  FP484_RS10785 (FP484_10785) comGC 2165232..2165543 (-) 312 WP_000472253.1 competence type IV pilus major pilin ComGC Machinery gene
  FP484_RS10790 (FP484_10790) comGB 2165557..2166627 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  FP484_RS10795 (FP484_10795) comGA 2166599..2167573 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  FP484_RS10800 (FP484_10800) - 2167625..2168248 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  FP484_RS10805 (FP484_10805) - 2168245..2168574 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FP484_RS10810 (FP484_10810) - 2168574..2169560 (-) 987 WP_000161314.1 ROK family glucokinase -
  FP484_RS10815 (FP484_10815) - 2169557..2169760 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=375699 FP484_RS10780 WP_001788899.1 2164808..2165254(-) (comGD) [Staphylococcus aureus strain B8-13D]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=375699 FP484_RS10780 WP_001788899.1 2164808..2165254(-) (comGD) [Staphylococcus aureus strain B8-13D]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment