Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   G4G26_RS08950 Genome accession   NZ_CP049924
Coordinates   1731727..1732158 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain So1b     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726727..1737158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS08930 (G4G26_08965) spoVS 1727289..1727549 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  G4G26_RS08935 (G4G26_08970) tdh 1727814..1728857 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  G4G26_RS08940 (G4G26_08975) kbl 1728870..1730048 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  G4G26_RS08945 (G4G26_08980) miaB 1730196..1731725 (+) 1530 WP_088467662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  G4G26_RS08950 (G4G26_08985) ymcA 1731727..1732158 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  G4G26_RS08955 (G4G26_08990) cotE 1732419..1732964 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  G4G26_RS08960 (G4G26_08995) hexA 1733097..1735673 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=375640 G4G26_RS08950 WP_003231834.1 1731727..1732158(+) (ymcA) [Bacillus subtilis strain So1b]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=375640 G4G26_RS08950 WP_003231834.1 1731727..1732158(+) (ymcA) [Bacillus subtilis strain So1b]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment