Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   G4G26_RS07935 Genome accession   NZ_CP049924
Coordinates   1525781..1526230 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain So1b     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520781..1531230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS07895 (G4G26_07930) ctaE 1520797..1521420 (+) 624 WP_015715836.1 cytochrome c oxidase subunit III -
  G4G26_RS07900 (G4G26_07935) ctaF 1521423..1521755 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  G4G26_RS07905 (G4G26_07940) ctaG 1521783..1522676 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  G4G26_RS07910 (G4G26_07945) ylbA 1522708..1523070 (-) 363 WP_003232238.1 YugN family protein -
  G4G26_RS07915 (G4G26_07950) ylbB 1523210..1523656 (+) 447 WP_003221362.1 CBS domain-containing protein -
  G4G26_RS07920 (G4G26_07955) ylbC 1523740..1524780 (+) 1041 WP_015715838.1 CAP domain-containing protein -
  G4G26_RS07925 (G4G26_07960) ylbD 1525012..1525410 (+) 399 WP_003232233.1 YlbD family protein -
  G4G26_RS07930 (G4G26_07965) ylbE 1525426..1525665 (+) 240 WP_003232231.1 YlbE-like family protein -
  G4G26_RS07935 (G4G26_07970) ylbF 1525781..1526230 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  G4G26_RS07940 (G4G26_07975) ylbG 1526285..1526557 (+) 273 WP_015715839.1 YlbG family protein -
  G4G26_RS07945 (G4G26_07980) rsmD 1526880..1527434 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G4G26_RS07950 (G4G26_07985) coaD 1527439..1527924 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  G4G26_RS07955 (G4G26_07990) spoVV 1527935..1529161 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  G4G26_RS07960 (G4G26_07995) ylbK 1529342..1530124 (+) 783 WP_003232221.1 patatin family protein -
  G4G26_RS07965 (G4G26_08000) sepM 1530126..1531151 (+) 1026 WP_182932253.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=375628 G4G26_RS07935 WP_003221370.1 1525781..1526230(+) (ylbF) [Bacillus subtilis strain So1b]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=375628 G4G26_RS07935 WP_003221370.1 1525781..1526230(+) (ylbF) [Bacillus subtilis strain So1b]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1