Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   G4G26_RS07965 Genome accession   NZ_CP049924
Coordinates   1530126..1531151 (+) Length   341 a.a.
NCBI ID   WP_182932253.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525126..1536151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS07930 (G4G26_07965) ylbE 1525426..1525665 (+) 240 WP_003232231.1 YlbE-like family protein -
  G4G26_RS07935 (G4G26_07970) ylbF 1525781..1526230 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  G4G26_RS07940 (G4G26_07975) ylbG 1526285..1526557 (+) 273 WP_015715839.1 YlbG family protein -
  G4G26_RS07945 (G4G26_07980) rsmD 1526880..1527434 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G4G26_RS07950 (G4G26_07985) coaD 1527439..1527924 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  G4G26_RS07955 (G4G26_07990) spoVV 1527935..1529161 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  G4G26_RS07960 (G4G26_07995) ylbK 1529342..1530124 (+) 783 WP_003232221.1 patatin family protein -
  G4G26_RS07965 (G4G26_08000) sepM 1530126..1531151 (+) 1026 WP_182932253.1 protease DdcP Regulator
  G4G26_RS07970 (G4G26_08005) ylbM 1531168..1532415 (-) 1248 WP_015715841.1 nucleotidyltransferase -
  G4G26_RS07975 (G4G26_08010) - 1532412..1532597 (-) 186 WP_003232215.1 hypothetical protein -
  G4G26_RS07980 (G4G26_08015) ylbN 1532625..1533143 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  G4G26_RS07985 (G4G26_08020) rpmF 1533165..1533344 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  G4G26_RS07990 (G4G26_08025) gerR 1533490..1534071 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  G4G26_RS07995 (G4G26_08030) ylbP 1534128..1534610 (-) 483 WP_014476736.1 N-acetyltransferase -
  G4G26_RS08000 (G4G26_08035) - 1534770..1535666 (+) 897 WP_015252144.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37664.23 Da        Isoelectric Point: 6.5347

>NTDB_id=375629 G4G26_RS07965 WP_182932253.1 1530126..1531151(+) (sepM) [Bacillus subtilis strain So1b]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDNMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=375629 G4G26_RS07965 WP_182932253.1 1530126..1531151(+) (sepM) [Bacillus subtilis strain So1b]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCCAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATAACATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(128-195)

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.429

100

0.405