Detailed information NTG0375534

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G9W34_RS17645
• Genome accession: NZ_CP049852
• Coordinates: 3608511..3609503 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UPEC-774U/190308
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3603511..3614503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9W34_RS17625 (G9W34_17575)	ygbM	3604142..3604918 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
G9W34_RS17630 (G9W34_17580)	ygbN	3605007..3606371 (+)	1365	WP_000104433.1	GntP family transporter	-
G9W34_RS17635 (G9W34_17585)	-	3606514..3607557 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
G9W34_RS17640 (G9W34_17590)	-	3607782..3608333 (+)	552	WP_001179442.1	flavodoxin family protein	-
G9W34_RS17645 (G9W34_17595)	rpoS	3608511..3609503 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G9W34_RS17650 (G9W34_17600)	nlpD	3609566..3610660 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
G9W34_RS17655 (G9W34_17605)	pcm	3610845..3611471 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
G9W34_RS17660 (G9W34_17610)	surE	3611465..3612226 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G9W34_RS17665 (G9W34_17615)	truD	3612207..3613256 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
G9W34_RS17670 (G9W34_17620)	ispF	3613253..3613732 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G9W34_RS17675 (G9W34_17625)	ispD	3613732..3614442 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=375534 G9W34_RS17645 WP_000081550.1 3608511..3609503(-) (rpoS) [Escherichia coli strain UPEC-774U/190308]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=375534 G9W34_RS17645 WP_000081550.1 3608511..3609503(-) (rpoS) [Escherichia coli strain UPEC-774U/190308]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715