Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G9W35_RS22665 Genome accession   NZ_CP049845
Coordinates   4666359..4666964 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain UPEC-245U/190328     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4661359..4671964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W35_RS22645 (G9W35_22520) aes 4661396..4662355 (+) 960 WP_000801846.1 acetyl esterase -
  G9W35_RS22650 (G9W35_22525) hemH 4662352..4663314 (-) 963 WP_001250088.1 ferrochelatase -
  G9W35_RS22655 (G9W35_22530) adk 4663550..4664194 (-) 645 WP_001220233.1 adenylate kinase -
  G9W35_RS22660 (G9W35_22535) htpG 4664375..4666249 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  G9W35_RS22665 (G9W35_22540) recR 4666359..4666964 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G9W35_RS22670 (G9W35_22545) ybaB 4666964..4667293 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G9W35_RS22675 (G9W35_22550) dnaX 4667346..4669277 (-) 1932 WP_238020789.1 DNA polymerase III subunit gamma/tau -
  G9W35_RS22680 (G9W35_22555) apt 4669406..4669957 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G9W35_RS22685 (G9W35_22560) ybaN 4670110..4670487 (-) 378 WP_001188905.1 DUF454 family protein -
  G9W35_RS22690 (G9W35_22565) priC 4670557..4671084 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  G9W35_RS22695 (G9W35_22570) rsmS 4671098..4671259 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  G9W35_RS26215 - 4671312..4671410 (-) 99 Protein_4444 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=375477 G9W35_RS22665 WP_001195025.1 4666359..4666964(-) (recR) [Escherichia coli strain UPEC-245U/190328]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=375477 G9W35_RS22665 WP_001195025.1 4666359..4666964(-) (recR) [Escherichia coli strain UPEC-245U/190328]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment