Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9W35_RS14200 Genome accession   NZ_CP049845
Coordinates   2965476..2966903 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC-245U/190328     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2960476..2971903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W35_RS14170 (G9W35_14100) yeeZ 2960531..2961355 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  G9W35_RS14175 (G9W35_14105) yeeY 2961401..2962330 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9W35_RS14180 (G9W35_14110) yoeI 2962545..2962607 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9W35_RS14185 (G9W35_14115) plaP 2962597..2963955 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G9W35_RS14190 (G9W35_14120) tsuA 2964134..2965192 (+) 1059 WP_074499977.1 thiosulfate utilization transporter TsuA/YeeE -
  G9W35_RS14195 (G9W35_14125) tsuB 2965206..2965433 (+) 228 WP_074499976.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G9W35_RS14200 (G9W35_14130) sbcB 2965476..2966903 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  G9W35_RS14205 (G9W35_14135) dacD 2967112..2968278 (+) 1167 WP_001383231.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9W35_RS14210 (G9W35_14140) sbmC 2968396..2968869 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  G9W35_RS14215 (G9W35_14145) yeeA 2969068..2970126 (+) 1059 WP_074499974.1 FUSC family protein -
  G9W35_RS14220 (G9W35_14150) tmaR 2970298..2970627 (+) 330 WP_000450409.1 DUF496 family protein -
  G9W35_RS14225 - 2970728..2971093 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  G9W35_RS14230 - 2971364..2971753 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=375458 G9W35_RS14200 WP_000980539.1 2965476..2966903(-) (sbcB) [Escherichia coli strain UPEC-245U/190328]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=375458 G9W35_RS14200 WP_000980539.1 2965476..2966903(-) (sbcB) [Escherichia coli strain UPEC-245U/190328]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581