Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9W35_RS10775 Genome accession   NZ_CP049845
Coordinates   2234104..2234619 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain UPEC-245U/190328     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2229104..2239619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W35_RS10730 (G9W35_10665) csrA 2229691..2229876 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G9W35_RS10760 (G9W35_10695) yqaB 2231334..2231900 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9W35_RS10765 (G9W35_10700) yqaA 2231897..2232325 (+) 429 WP_001287457.1 YqaA family protein -
  G9W35_RS10770 (G9W35_10705) gshA 2232398..2233954 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G9W35_RS10775 (G9W35_10710) luxS 2234104..2234619 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  G9W35_RS10780 (G9W35_10715) emrB 2234683..2236221 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9W35_RS10785 (G9W35_10720) emrA 2236238..2237410 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9W35_RS10790 (G9W35_10725) emrR 2237537..2238067 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9W35_RS10795 (G9W35_10735) ygaH 2238158..2238493 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  G9W35_RS10800 (G9W35_10740) ygaZ 2238483..2239220 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=375449 G9W35_RS10775 WP_001130210.1 2234104..2234619(+) (luxS) [Escherichia coli strain UPEC-245U/190328]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=375449 G9W35_RS10775 WP_001130210.1 2234104..2234619(+) (luxS) [Escherichia coli strain UPEC-245U/190328]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737