Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CA2559_RS01500 Genome accession   NC_014230
Coordinates   377174..378535 (+) Length   453 a.a.
NCBI ID   WP_013186063.1    Uniprot ID   A3U568
Organism   Croceibacter atlanticus HTCC2559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 372174..383535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA2559_RS01485 (CA2559_01465) - 373997..374389 (-) 393 WP_013186060.1 hypothetical protein -
  CA2559_RS01490 (CA2559_01470) - 374475..375128 (-) 654 WP_013186061.1 response regulator transcription factor -
  CA2559_RS01495 (CA2559_01475) - 375128..377134 (-) 2007 WP_013186062.1 sensor histidine kinase -
  CA2559_RS01500 (CA2559_01480) radA 377174..378535 (+) 1362 WP_013186063.1 DNA repair protein RadA Machinery gene
  CA2559_RS01505 (CA2559_01485) - 378714..379847 (+) 1134 WP_013186064.1 M23 family metallopeptidase -
  CA2559_RS01510 (CA2559_01490) - 379923..381284 (+) 1362 WP_013186065.1 acyl-CoA dehydrogenase family protein -
  CA2559_RS01515 (CA2559_01495) greA 381381..381857 (-) 477 WP_013186066.1 transcription elongation factor GreA -
  CA2559_RS01520 (CA2559_01500) - 382082..382519 (+) 438 WP_148232764.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49728.16 Da        Isoelectric Point: 7.0596

>NTDB_id=37540 CA2559_RS01500 WP_013186063.1 377174..378535(+) (radA) [Croceibacter atlanticus HTCC2559]
MAKTKTTFFCQNCGTQYSKWQGQCSACKEWNTIAEEVIQKAEKSDWKTATAPKKRVAKPQKVADISYTQEQRYNTKNNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIALQLPFKTLYVSGEESAQQIKMRAERIDNSESNCFILTETKTQNIFKQV
EAIEPDIVVIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKETATPVILIGHITKDGNIAGPKVLEHMVDTVLQFEGD
RNHIYRILRAQKNRFGSTHELGIYEMQGSGLREVANPSEILLSKNEDDLSGTAIAATLEGMRPLMIEIQALVSSAVYGTP
QRSATGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNVTGGISVDDPAIDLAVVAAVLSSNEDIHVPKDICFAAEVGLAGEI
RPVPKIEQRILEAEKLGFASIMISRYCKLPKETYGINVVKAAKITDVVHYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=37540 CA2559_RS01500 WP_013186063.1 377174..378535(+) (radA) [Croceibacter atlanticus HTCC2559]
ATGGCCAAAACTAAAACTACCTTTTTCTGCCAAAACTGTGGCACACAATATTCAAAATGGCAAGGCCAATGTTCTGCTTG
TAAAGAGTGGAATACTATTGCCGAAGAGGTCATCCAAAAAGCTGAAAAAAGTGATTGGAAAACTGCTACAGCACCTAAGA
AAAGAGTGGCTAAGCCACAAAAGGTTGCAGATATCTCTTACACTCAAGAACAACGCTACAATACTAAAAACAATGAGCTA
AATCGTGTTTTAGGTGGTGGCTTAGTGCCAGGAAGCTTAACACTTCTTGGTGGTGAACCTGGTATAGGTAAAAGTACCTT
AATGCTTCAAATAGCGTTACAGCTTCCGTTTAAAACTCTTTATGTTTCCGGAGAAGAAAGTGCTCAACAAATAAAAATGA
GGGCAGAACGTATAGATAATTCAGAAAGTAATTGCTTTATCTTAACTGAAACTAAGACACAAAACATTTTTAAGCAAGTA
GAAGCTATTGAGCCAGATATTGTGGTTATAGACTCTATACAAACACTTCATTCAGATTATATAGAAAGTAGCGCAGGTAG
TATTTCTCAAATTAGAGAGTGTACTACAGAGCTTATAAAGTTTGCTAAAGAAACAGCTACACCAGTTATTTTAATTGGTC
ATATTACCAAAGACGGAAACATTGCTGGACCAAAAGTCTTAGAGCATATGGTAGATACTGTTTTGCAGTTTGAAGGCGAC
AGAAATCATATTTATAGAATTCTTAGAGCTCAAAAAAACCGTTTTGGAAGTACTCACGAACTTGGTATTTATGAAATGCA
AGGCTCTGGTTTGAGAGAGGTTGCCAATCCTAGTGAAATATTACTATCTAAAAATGAAGATGACCTAAGTGGTACTGCTA
TTGCAGCAACTCTTGAGGGTATGCGCCCATTAATGATAGAGATACAAGCCCTAGTAAGCTCTGCTGTTTACGGTACTCCA
CAACGAAGCGCTACAGGATATAATGCCAAACGACTTAATATGCTTTTAGCTGTTCTAGAAAAAAGAGCTGGATTTAAATT
AGGTGCAAAAGATGTCTTTTTAAATGTAACCGGTGGAATTTCTGTAGATGATCCTGCAATTGATCTCGCTGTGGTTGCAG
CTGTTTTATCCAGCAATGAAGATATTCATGTTCCTAAAGATATTTGTTTTGCAGCAGAAGTGGGTTTAGCAGGAGAAATA
AGACCTGTACCAAAGATAGAGCAACGAATACTAGAAGCTGAAAAACTAGGCTTTGCATCAATTATGATTTCACGCTATTG
TAAACTTCCGAAGGAAACCTATGGCATCAACGTAGTAAAAGCAGCGAAGATTACAGATGTTGTGCATTATCTTTTTGGAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-424)

AAA domain (AAA_25)

(64-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3U568

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.69

100

0.492
  radA Streptococcus pneumoniae Rx1

48.69

100

0.492
  radA Streptococcus pneumoniae D39

48.69

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.492
  radA Streptococcus mitis NCTC 12261

48.472

100

0.49
  radA Bacillus subtilis subsp. subtilis str. 168

47.939

100

0.488
  radA Streptococcus mitis SK321

50.117

94.26

0.472

Multiple sequence alignment