Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | TRAD_RS16705 | Genome accession | NC_014221 |
| Coordinates | 777521..777898 (+) | Length | 125 a.a. |
| NCBI ID | WP_013177220.1 | Uniprot ID | D7CTJ1 |
| Organism | Truepera radiovictrix DSM 17093 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 772521..782898
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TRAD_RS03530 (Trad_0705) | - | 773531..774466 (+) | 936 | WP_013177213.1 | acetamidase/formamidase family protein | - |
| TRAD_RS03535 (Trad_0706) | rbsK | 774594..775493 (+) | 900 | WP_013177214.1 | ribokinase | - |
| TRAD_RS03540 (Trad_0707) | - | 775503..775796 (-) | 294 | WP_013177215.1 | PspC domain-containing protein | - |
| TRAD_RS03545 (Trad_0708) | - | 775814..776164 (-) | 351 | WP_013177216.1 | DUF309 domain-containing protein | - |
| TRAD_RS03550 (Trad_0709) | - | 776169..776564 (-) | 396 | WP_013177217.1 | metallopeptidase family protein | - |
| TRAD_RS03555 (Trad_0711) | - | 776951..777181 (-) | 231 | WP_013177219.1 | DUF433 domain-containing protein | - |
| TRAD_RS16705 (Trad_0712) | pilV | 777521..777898 (+) | 378 | WP_013177220.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| TRAD_RS15040 (Trad_0713) | - | 777994..778365 (+) | 372 | WP_013177221.1 | pilin, type IV | - |
| TRAD_RS03570 (Trad_0714) | - | 778380..778586 (+) | 207 | WP_013177222.1 | hypothetical protein | - |
| TRAD_RS16240 (Trad_0715) | - | 778717..778887 (-) | 171 | WP_013177223.1 | hypothetical protein | - |
| TRAD_RS16245 (Trad_0716) | - | 778913..779188 (-) | 276 | WP_013177224.1 | hypothetical protein | - |
| TRAD_RS03580 (Trad_0717) | - | 779321..780262 (-) | 942 | WP_013177225.1 | helix-turn-helix domain-containing protein | - |
| TRAD_RS03585 (Trad_0718) | - | 780728..782590 (+) | 1863 | WP_013177226.1 | glycoside hydrolase family 2 TIM barrel-domain containing protein | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 12878.56 Da Isoelectric Point: 4.8538
>NTDB_id=37532 TRAD_RS16705 WP_013177220.1 777521..777898(+) (pilV) [Truepera radiovictrix DSM 17093]
MRNAKGRQANQGFTLIELLIVIAIIGILAAVLIPNLLQARNRANDTAAQAYIRNCYTAVESQRDPVTQALPTAATCDALE
PGVPTPAAVTGPGTITADGNGGFSVAATSVTNTNFTFDGATMTSN
MRNAKGRQANQGFTLIELLIVIAIIGILAAVLIPNLLQARNRANDTAAQAYIRNCYTAVESQRDPVTQALPTAATCDALE
PGVPTPAAVTGPGTITADGNGGFSVAATSVTNTNFTFDGATMTSN
Nucleotide
Download Length: 378 bp
>NTDB_id=37532 TRAD_RS16705 WP_013177220.1 777521..777898(+) (pilV) [Truepera radiovictrix DSM 17093]
ATGCGCAACGCCAAAGGTCGCCAAGCCAACCAAGGTTTCACCCTTATCGAACTGCTGATCGTCATCGCCATTATCGGCAT
TCTCGCGGCGGTCCTCATTCCAAACCTCCTGCAGGCGCGCAACCGCGCGAACGATACCGCAGCCCAAGCCTACATCCGTA
ACTGCTACACGGCGGTCGAAAGCCAGCGCGACCCAGTGACGCAAGCGCTTCCAACCGCGGCGACCTGTGACGCGCTCGAG
CCTGGAGTTCCCACGCCTGCTGCGGTCACGGGACCGGGAACGATTACGGCTGACGGCAACGGTGGGTTCAGCGTCGCGGC
GACGAGCGTCACGAACACCAACTTCACCTTCGACGGCGCCACGATGACCTCGAACTAG
ATGCGCAACGCCAAAGGTCGCCAAGCCAACCAAGGTTTCACCCTTATCGAACTGCTGATCGTCATCGCCATTATCGGCAT
TCTCGCGGCGGTCCTCATTCCAAACCTCCTGCAGGCGCGCAACCGCGCGAACGATACCGCAGCCCAAGCCTACATCCGTA
ACTGCTACACGGCGGTCGAAAGCCAGCGCGACCCAGTGACGCAAGCGCTTCCAACCGCGGCGACCTGTGACGCGCTCGAG
CCTGGAGTTCCCACGCCTGCTGCGGTCACGGGACCGGGAACGATTACGGCTGACGGCAACGGTGGGTTCAGCGTCGCGGC
GACGAGCGTCACGAACACCAACTTCACCTTCGACGGCGCCACGATGACCTCGAACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
60.331 |
96.8 |
0.584 |