Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPKB_RS05695 Genome accession   NC_017354
Coordinates   1190131..1191180 (+) Length   349 a.a.
NCBI ID   WP_000115446.1    Uniprot ID   -
Organism   Helicobacter pylori 52     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185131..1196180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPKB_RS05675 (HPKB_1118) - 1185185..1185928 (+) 744 WP_014533514.1 carbonic anhydrase -
  HPKB_RS05680 (HPKB_1119) - 1186159..1187283 (-) 1125 WP_001144165.1 DUF874 family protein -
  HPKB_RS05685 (HPKB_1120) asd 1187715..1188755 (-) 1041 WP_000860947.1 aspartate-semialdehyde dehydrogenase -
  HPKB_RS05690 (HPKB_1121) hisS 1188742..1190069 (-) 1328 Protein_1090 histidine--tRNA ligase -
  HPKB_RS05695 (HPKB_1123) waaF 1190131..1191180 (+) 1050 WP_000115446.1 lipopolysaccharide heptosyltransferase II Regulator
  HPKB_RS05700 (HPKB_1124) - 1191373..1191861 (-) 489 WP_000744157.1 hypothetical protein -
  HPKB_RS05705 (HPKB_1125) fusA 1192391..1194469 (-) 2079 WP_000101827.1 elongation factor G -
  HPKB_RS05710 (HPKB_1126) rpsG 1194481..1194948 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HPKB_RS05715 (HPKB_1127) rpsL 1194964..1195371 (-) 408 WP_001142318.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39615.48 Da        Isoelectric Point: 9.5992

>NTDB_id=37527 HPKB_RS05695 WP_000115446.1 1190131..1191180(+) (waaF) [Helicobacter pylori 52]
MSVNAPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDRKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37527 HPKB_RS05695 WP_000115446.1 1190131..1191180(+) (waaF) [Helicobacter pylori 52]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTAATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361