Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FPT06_RS06980 Genome accession   NZ_CP041994
Coordinates   1376544..1377278 (+) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis strain INT-01     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371544..1382278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS06950 (FPT06_06950) - 1371740..1373404 (+) 1665 WP_002939193.1 DAK2 domain-containing protein -
  FPT06_RS06955 (FPT06_06955) tsaE 1373505..1373945 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FPT06_RS06960 (FPT06_06960) - 1373938..1374465 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  FPT06_RS06965 (FPT06_06965) - 1374462..1375655 (+) 1194 WP_002939198.1 LCP family protein -
  FPT06_RS06970 (FPT06_06970) - 1375764..1376066 (-) 303 WP_002939199.1 hypothetical protein -
  FPT06_RS06975 (FPT06_06975) - 1376068..1376481 (-) 414 WP_002939203.1 HIT family protein -
  FPT06_RS06980 (FPT06_06980) pptA 1376544..1377278 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  FPT06_RS06985 (FPT06_06985) - 1377275..1378315 (+) 1041 WP_013730555.1 ABC transporter permease -
  FPT06_RS06990 (FPT06_06990) ccrZ 1378365..1379159 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  FPT06_RS06995 (FPT06_06995) trmB 1379156..1379794 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FPT06_RS07000 (FPT06_07000) rimP 1380052..1380522 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  FPT06_RS07005 (FPT06_07005) nusA 1380595..1381737 (+) 1143 WP_013730553.1 transcription termination factor NusA -
  FPT06_RS07010 (FPT06_07010) rnpM 1381754..1382050 (+) 297 WP_002942375.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=375241 FPT06_RS06980 WP_002939204.1 1376544..1377278(+) (pptA) [Streptococcus suis strain INT-01]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=375241 FPT06_RS06980 WP_002939204.1 1376544..1377278(+) (pptA) [Streptococcus suis strain INT-01]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment