Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FPT06_RS03990 Genome accession   NZ_CP041994
Coordinates   805394..806107 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain INT-01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 800075..832684 805394..806107 within 0


Gene organization within MGE regions


Location: 800075..832684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS03950 (FPT06_03950) - 800075..800332 (-) 258 WP_002935939.1 hypothetical protein -
  FPT06_RS03955 (FPT06_03955) - 800379..800756 (-) 378 WP_002935940.1 DUF1310 family protein -
  FPT06_RS03960 (FPT06_03960) - 800782..801045 (-) 264 WP_022540536.1 hypothetical protein -
  FPT06_RS03965 (FPT06_03965) - 801038..801430 (-) 393 WP_014636774.1 DUF1310 family protein -
  FPT06_RS03970 (FPT06_03970) - 801596..803929 (-) 2334 WP_002935942.1 endonuclease MutS2 -
  FPT06_RS03980 (FPT06_03980) - 804480..805028 (-) 549 WP_002935945.1 CvpA family protein -
  FPT06_RS03985 (FPT06_03985) - 805025..805336 (-) 312 WP_002935948.1 hypothetical protein -
  FPT06_RS03990 (FPT06_03990) treR 805394..806107 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  FPT06_RS03995 (FPT06_03995) treP 806340..808334 (+) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -
  FPT06_RS04000 (FPT06_04000) treC 808415..810040 (+) 1626 WP_009909185.1 alpha,alpha-phosphotrehalase -
  FPT06_RS04005 (FPT06_04005) - 810453..811628 (-) 1176 WP_013730102.1 LysM domain-containing protein -
  FPT06_RS04015 (FPT06_04015) - 811977..812960 (-) 984 WP_009909178.1 Gfo/Idh/MocA family protein -
  FPT06_RS04020 (FPT06_04020) rnhC 813045..813935 (+) 891 WP_013730101.1 ribonuclease HIII -
  FPT06_RS04025 (FPT06_04025) lepB 813945..814574 (+) 630 WP_002935959.1 signal peptidase I -
  FPT06_RS04030 (FPT06_04030) - 814638..817127 (+) 2490 WP_013730100.1 ATP-dependent RecD-like DNA helicase -
  FPT06_RS10965 - 817166..819227 (-) 2062 Protein_789 heavy metal translocating P-type ATPase -
  FPT06_RS04050 (FPT06_04050) - 819400..820209 (-) 810 WP_002935966.1 hypothetical protein -
  FPT06_RS04055 (FPT06_04055) - 820303..821331 (-) 1029 WP_002935967.1 ABC transporter substrate-binding protein -
  FPT06_RS04060 (FPT06_04060) - 821362..822153 (-) 792 WP_002935969.1 ABC transporter ATP-binding protein -
  FPT06_RS04065 (FPT06_04065) - 822138..822896 (-) 759 WP_002935973.1 ABC transporter permease -
  FPT06_RS04070 (FPT06_04070) - 823118..823879 (-) 762 WP_002935974.1 hypothetical protein -
  FPT06_RS04075 (FPT06_04075) - 824094..827033 (-) 2940 WP_002935975.1 right-handed parallel beta-helix repeat-containing protein -
  FPT06_RS04080 (FPT06_04080) - 827153..829039 (-) 1887 WP_002935976.1 DUF4838 domain-containing protein -
  FPT06_RS04085 (FPT06_04085) - 829044..830372 (-) 1329 WP_013730098.1 PTS sugar transporter subunit IIC -
  FPT06_RS04090 (FPT06_04090) - 830564..831763 (+) 1200 WP_013730097.1 ROK family protein -
  FPT06_RS04100 (FPT06_04100) - 832046..832684 (-) 639 WP_002935979.1 endonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=375215 FPT06_RS03990 WP_012774930.1 805394..806107(-) (treR) [Streptococcus suis strain INT-01]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=375215 FPT06_RS03990 WP_012774930.1 805394..806107(-) (treR) [Streptococcus suis strain INT-01]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment