Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FP435_RS00845 Genome accession   NZ_CP041987
Coordinates   62180..63979 (-) Length   599 a.a.
NCBI ID   WP_265483876.1    Uniprot ID   -
Organism   Lactobacillus sp. PV037     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 57180..68979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP435_RS00825 (FP435_00815) - 57694..58317 (+) 624 WP_265484613.1 metal ABC transporter ATP-binding protein -
  FP435_RS00830 (FP435_00820) - 58317..59108 (+) 792 WP_265483873.1 metal ABC transporter permease -
  FP435_RS00835 (FP435_00825) guaB 59331..60485 (+) 1155 WP_265483874.1 IMP dehydrogenase -
  FP435_RS00840 (FP435_00830) guaA 60500..62050 (+) 1551 WP_265483875.1 glutamine-hydrolyzing GMP synthase -
  FP435_RS00845 (FP435_00835) pepF 62180..63979 (-) 1800 WP_265483876.1 oligoendopeptidase F Regulator
  FP435_RS00850 (FP435_00840) - 64085..65224 (+) 1140 WP_265483877.1 LCP family protein -
  FP435_RS00855 (FP435_00845) - 65416..66864 (+) 1449 WP_265483878.1 ABC-F family ATP-binding cassette domain-containing protein -
  FP435_RS00860 (FP435_00850) - 66878..67660 (+) 783 WP_265483879.1 threonine/serine exporter family protein -
  FP435_RS00865 (FP435_00855) - 67664..68134 (+) 471 WP_265484614.1 threonine/serine exporter family protein -
  FP435_RS00870 (FP435_00860) - 68390..68896 (+) 507 WP_265483880.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68155.00 Da        Isoelectric Point: 4.6356

>NTDB_id=375185 FP435_RS00845 WP_265483876.1 62180..63979(-) (pepF) [Lactobacillus sp. PV037]
MVLPTRNEVSDSLKWDLSRIFKNDQEWEEEFKNISQKIAKIPTYSQNFTQSATNLYNGLTAITSIERQLEKLYSYATLSS
DADTTNTHYLGYVAQVQDLVTKMNANSAFVDPAILEIDEKTLTQFIEDDPRLELFTHKFEELTKKRPHTLSADKEKIIAD
ASSALNSSANTFNILTNSDIEYGFTQDDSGEMVQLSEGIYSTLIQSANRSVRKNAFTTLYDSYAQFNNTLASTLAGNVKM
QNYQAQVHNYNSAKEASLAANNIPNIVYDTLIKQVNEHLPLFHRYIALRKKILSLPDLQMYDMYVPLTGKPALSYNFEEA
KIEAKKALAILGDDYLKQVDYIFNNRVIDPIESKGKVTGAYSGGSYDTDAYELLNWTNDVDSLYTLVHETGHSVHSMYTR
QTQPYIYGDYPIFVAEIASTTNENLLTEYFLENIQDPKTRAFVLNYYLDAVKGTLFRQTQFAEFEQFIHEADSQGIPLTA
ETLNNAYSNLNSRYYGKDVEPGGDIAMEWSRIPHFYYNFYVYQYATGFAAASALADGIMHGDSTQRDKYLEFLKAGSSDY
PVNLVKKAGVDMTKPDYLENTFNTFEKRLNELENLTNTL

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=375185 FP435_RS00845 WP_265483876.1 62180..63979(-) (pepF) [Lactobacillus sp. PV037]
ATGGTATTACCAACAAGAAACGAAGTTAGCGATTCTTTAAAATGGGATCTAAGTCGCATTTTTAAAAACGACCAAGAATG
GGAAGAAGAATTTAAAAATATTTCTCAGAAAATTGCTAAGATTCCAACTTATAGTCAGAATTTTACCCAATCAGCAACAA
ATCTATATAACGGGCTAACAGCCATCACTTCAATTGAGCGCCAGCTAGAAAAGCTTTATAGCTATGCTACTTTGTCTAGT
GATGCTGACACTACAAATACCCACTATTTAGGTTATGTTGCACAAGTTCAAGATTTAGTTACTAAAATGAACGCTAATAG
TGCCTTTGTAGATCCAGCAATTTTGGAAATTGACGAAAAAACATTAACTCAATTTATTGAGGATGATCCACGACTTGAAC
TTTTTACCCATAAATTTGAAGAACTTACCAAAAAGCGCCCTCATACCTTATCCGCAGATAAAGAAAAGATAATTGCTGAT
GCAAGCAGTGCACTTAATAGTTCTGCCAATACTTTTAATATTTTAACTAATTCTGATATTGAATACGGCTTTACTCAGGA
TGATAGTGGCGAAATGGTTCAATTATCAGAAGGAATTTACTCAACTTTGATTCAATCGGCCAACCGATCTGTGCGTAAAA
ATGCTTTTACTACTTTATATGATAGTTATGCTCAATTTAACAATACCCTTGCTTCAACTTTAGCAGGAAATGTCAAAATG
CAAAATTACCAGGCTCAAGTTCATAACTATAACTCAGCTAAAGAAGCTTCTTTAGCTGCTAATAATATTCCTAATATTGT
TTATGATACCTTGATTAAACAAGTTAATGAGCATCTACCACTTTTTCATCGTTATATTGCTTTGCGCAAAAAAATATTAA
GTCTGCCTGATTTACAAATGTATGATATGTATGTACCCCTAACTGGAAAGCCTGCCTTATCATATAACTTTGAAGAGGCA
AAAATTGAAGCTAAAAAAGCACTTGCGATTTTAGGAGATGATTATTTAAAACAAGTTGATTATATTTTTAATAATCGTGT
AATTGATCCTATCGAATCAAAAGGAAAAGTCACTGGCGCATACTCTGGTGGGTCTTATGATACTGATGCGTATGAGCTTC
TTAACTGGACAAATGATGTCGATTCTCTCTATACCTTAGTCCATGAAACAGGCCATTCAGTTCATTCAATGTACACTCGA
CAAACGCAACCTTATATCTATGGTGACTACCCTATTTTTGTTGCTGAAATTGCTTCAACTACTAATGAAAATCTTTTAAC
GGAATATTTCCTAGAAAATATTCAAGATCCTAAAACTCGGGCTTTTGTCCTAAATTATTATTTAGATGCTGTTAAAGGCA
CTCTCTTTCGTCAAACACAATTTGCTGAATTTGAGCAATTCATTCATGAAGCTGATAGCCAAGGAATTCCACTTACTGCA
GAAACTTTAAATAATGCTTATTCAAACTTAAATAGTCGCTACTACGGTAAAGATGTCGAACCAGGTGGTGATATTGCGAT
GGAATGGAGTCGGATTCCACATTTTTACTATAACTTTTACGTTTACCAATATGCTACTGGCTTTGCAGCTGCTTCCGCTT
TGGCAGATGGCATTATGCATGGCGATTCTACGCAACGGGATAAATACCTTGAATTTTTAAAAGCTGGTTCTTCCGATTAT
CCAGTTAATTTAGTAAAAAAAGCTGGTGTGGATATGACGAAACCAGATTACCTTGAAAATACCTTTAATACTTTTGAAAA
GAGACTCAATGAATTAGAAAACTTGACTAATACATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.831

0.497

Multiple sequence alignment