Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FP433_RS07065 Genome accession   NZ_CP041983
Coordinates   1447961..1449760 (+) Length   599 a.a.
NCBI ID   WP_265486673.1    Uniprot ID   -
Organism   Lactobacillus sp. PV012     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442961..1454760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP433_RS07045 (FP433_06960) - 1443714..1444184 (-) 471 WP_265484614.1 threonine/serine exporter family protein -
  FP433_RS07050 (FP433_06965) - 1444188..1444970 (-) 783 WP_265486672.1 threonine/serine exporter family protein -
  FP433_RS07055 (FP433_06970) - 1444984..1446524 (-) 1541 Protein_1349 ABC-F family ATP-binding cassette domain-containing protein -
  FP433_RS07060 (FP433_06975) - 1446716..1447855 (-) 1140 WP_265483877.1 LCP family protein -
  FP433_RS07065 (FP433_06980) pepF 1447961..1449760 (+) 1800 WP_265486673.1 oligoendopeptidase F Regulator
  FP433_RS07070 (FP433_06985) guaA 1449891..1451441 (-) 1551 WP_416202973.1 glutamine-hydrolyzing GMP synthase -
  FP433_RS07075 (FP433_06990) guaB 1451456..1452610 (-) 1155 WP_265486675.1 IMP dehydrogenase -
  FP433_RS07080 (FP433_06995) - 1452833..1453624 (-) 792 WP_265486676.1 metal ABC transporter permease -
  FP433_RS07085 (FP433_07000) - 1453624..1454247 (-) 624 WP_265484613.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68135.94 Da        Isoelectric Point: 4.6356

>NTDB_id=375184 FP433_RS07065 WP_265486673.1 1447961..1449760(+) (pepF) [Lactobacillus sp. PV012]
MVLPTRNEVSDSLKWDLSRIFKNDQEWEEEFKNISQKIAKIPTYSQNFTQSATNLYNGLTAITSIERQLEKLYSYATLSS
DADTTNTHYLGYVAQVQDLVTKMNANSAFVDPAILEIDEKTLTQFIEDDPRLELFTHKFEELNKKRPHTLSADKEKIIAD
ASSALNSSANTFNILTNSDIEYGFTQDDSGEMVQLSEGIYSTLIQSANRSVRKNAFTTLYDSYAQFTNTLASTLAGNVKM
QNYQAQVHNYNSAKEASLAANNIPNIVYDTLIKQVNEHLPLFHRYIALRKKILDLPDLQMYDMYVPLTGKPALSYNFEEA
KIEAKKALAILGDDYLKQVDYIFNNRVIDPIESKGKVTGAYSGGSYDTDAYELLNWTNDVDSLYTLAHETGHSVHSMYTR
QTQPYIYGDYPIFVAEIASTTNENLLTEYFLENIQDPKTRAFVLNYYLDAVKGTLFRQTQFAEFEQFIHEADSQGIPLTA
ETLNNAYSNLNSRYYGKDVEPGGDIAMEWSRIPHFYYNFYVYQYATGFAAASALADGIIHGDSTQRNKYLEFLKAGSSDY
PVNLVKKAGVDMTKPDYLENTFNTFEKRLNELENLTNTL

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=375184 FP433_RS07065 WP_265486673.1 1447961..1449760(+) (pepF) [Lactobacillus sp. PV012]
ATGGTATTACCAACAAGAAACGAAGTTAGCGATTCTTTAAAATGGGATCTAAGTCGCATTTTTAAAAACGACCAAGAATG
GGAAGAAGAATTTAAAAATATTTCCCAGAAAATTGCTAAGATTCCAACTTATAGTCAGAATTTTACCCAATCAGCAACAA
ATCTATATAACGGGCTAACAGCCATCACTTCAATTGAGCGCCAGCTAGAAAAGCTTTATAGCTATGCTACTTTGTCTAGT
GATGCTGACACTACAAATACCCACTACTTAGGTTATGTTGCACAAGTTCAAGATTTAGTTACTAAAATGAACGCTAATAG
TGCCTTTGTAGATCCAGCAATTTTGGAAATTGACGAAAAAACATTAACTCAATTTATTGAGGATGATCCACGACTTGAAC
TTTTTACCCATAAATTTGAAGAACTTAACAAAAAGCGCCCTCATACCTTATCCGCAGATAAAGAAAAGATAATTGCTGAT
GCAAGCAGTGCACTTAATAGTTCTGCCAATACTTTTAATATTTTAACTAATTCTGATATTGAATACGGCTTTACTCAGGA
TGATAGTGGCGAAATGGTTCAATTATCAGAAGGAATTTACTCAACTTTGATTCAATCGGCCAACCGATCTGTGCGTAAAA
ATGCTTTTACTACTTTATATGATAGTTATGCTCAATTTACCAATACCCTTGCTTCAACTTTAGCAGGAAATGTCAAAATG
CAAAATTACCAGGCTCAAGTTCATAACTATAACTCAGCTAAAGAAGCTTCTTTAGCTGCTAATAATATTCCTAATATTGT
TTATGATACCTTAATTAAACAAGTTAATGAGCATCTACCACTTTTTCATCGTTATATTGCTTTGCGCAAAAAAATATTAG
ATCTGCCCGATTTACAAATGTATGATATGTATGTACCCCTAACTGGAAAGCCTGCCTTATCATATAACTTTGAAGAGGCA
AAAATTGAAGCTAAAAAAGCACTTGCGATTTTAGGAGATGATTATTTAAAACAAGTTGATTATATTTTTAATAATCGTGT
AATTGATCCTATCGAATCAAAAGGAAAAGTCACTGGTGCATACTCTGGTGGTTCTTATGATACTGATGCTTATGAGCTTC
TTAACTGGACAAATGATGTCGATTCTCTCTATACCTTAGCCCATGAAACAGGCCATTCAGTTCATTCAATGTACACTCGA
CAAACTCAACCTTATATCTATGGTGACTACCCTATTTTTGTTGCTGAAATTGCTTCAACTACTAATGAAAATCTTTTAAC
GGAATATTTCCTAGAGAATATTCAAGATCCTAAAACTCGGGCTTTTGTCCTAAATTATTATTTAGATGCTGTTAAAGGCA
CTCTCTTTCGTCAAACACAATTTGCTGAATTTGAGCAATTCATTCATGAAGCTGATAGCCAAGGAATTCCGCTTACTGCA
GAAACTTTAAATAATGCTTATTCCAACTTAAATAGTCGCTACTACGGTAAAGATGTCGAACCAGGTGGTGATATTGCGAT
GGAATGGAGTCGAATTCCACATTTTTACTATAACTTTTACGTTTACCAATATGCTACTGGCTTTGCAGCTGCTTCCGCTT
TGGCAGATGGCATTATACATGGCGATTCTACGCAACGGAATAAATATCTTGAGTTTTTAAAGGCTGGCTCTTCCGATTAT
CCAGTTAATTTAGTAAAAAAAGCTGGTGTAGATATGACGAAACCAGATTACCTTGAAAATACCTTTAATACTTTTGAAAA
GAGACTCAATGAATTAGAAAACTTGACTAATACATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.831

0.496

Multiple sequence alignment