Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FP433_RS01710 Genome accession   NZ_CP041983
Coordinates   349227..350606 (+) Length   459 a.a.
NCBI ID   WP_265483440.1    Uniprot ID   -
Organism   Lactobacillus sp. PV012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344227..355606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP433_RS01680 (FP433_01660) - 344920..345198 (+) 279 WP_265483447.1 hypothetical protein -
  FP433_RS01685 (FP433_01665) - 345198..345425 (+) 228 WP_416202975.1 hypothetical protein -
  FP433_RS01690 (FP433_01670) - 345438..346115 (+) 678 WP_265483446.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  FP433_RS01695 (FP433_01675) - 346209..347144 (+) 936 WP_265483445.1 AAA family ATPase -
  FP433_RS01700 (FP433_01680) pepC 347183..348532 (-) 1350 WP_265483443.1 aminopeptidase C -
  FP433_RS01705 (FP433_01685) - 348676..349227 (+) 552 WP_265483441.1 dUTP diphosphatase -
  FP433_RS01710 (FP433_01690) radA 349227..350606 (+) 1380 WP_265483440.1 DNA repair protein RadA Machinery gene
  FP433_RS01715 (FP433_01695) gltX 350688..352187 (+) 1500 WP_265483438.1 glutamate--tRNA ligase -
  FP433_RS01720 (FP433_01700) cysS 352277..353692 (+) 1416 WP_265483436.1 cysteine--tRNA ligase -
  FP433_RS01725 (FP433_01705) - 353685..354116 (+) 432 WP_265483434.1 Mini-ribonuclease 3 -
  FP433_RS01730 (FP433_01710) rlmB 354109..354864 (+) 756 WP_265483432.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FP433_RS01735 (FP433_01715) - 355016..355579 (+) 564 WP_265483430.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50168.92 Da        Isoelectric Point: 7.7214

>NTDB_id=375174 FP433_RS01710 WP_265483440.1 349227..350606(+) (radA) [Lactobacillus sp. PV012]
MAKVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKESIQSSKTSTKATPSRLMTKVGLNEPVKLNEVKAEKETRIKTEFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMGAIAKKHKVLYVSGEESASQIKMRADRLNVAESGMLLYPETNMENI
RHQIDEIKPKFLVIDSIQTMNEPSLDSVVGSAAQVKEVTNELMKIAKNDEITVFVVGHVTKEGAIAGPKILEHMVDTVLY
FEGDGHHAYRMLRSVKNRFGATNEMGMFEMENEGLKEVTNPSEIFLDERLPDSTGSAIVVSLEGTRPIMADIQALVAPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAIAMAVASSYKNEGIPATDCFVGEIGL
TGEVRRVNQIQARVNEAAKIGFKRIFIPRHNLSTDLKNRTDIEVIGISSLAQALKLVFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=375174 FP433_RS01710 WP_265483440.1 349227..350606(+) (radA) [Lactobacillus sp. PV012]
ATGGCAAAAGTTAAAACTCAATATAAATGTAGAAGTTGTGGATATATTTCTGCCTCATATTTGGGGCGTTGTCCTAATTG
TGGGGCCTGGAATCAGTTTGAAAAAGAAAGTATTCAAAGCTCTAAGACTTCTACTAAAGCAACTCCCAGTCGTTTAATGA
CCAAAGTAGGATTAAATGAGCCAGTAAAACTTAATGAAGTAAAGGCAGAAAAAGAAACACGAATTAAGACAGAATTTGAA
GAGTTAAATCGGGTTTTAGGTGGAGGAATTGTGCCGGGATCACTTGTACTAATTGGTGGAGATCCAGGAATTGGTAAGTC
GACTTTAATGTTACAAATCATGGGTGCAATTGCAAAGAAACACAAAGTTTTGTATGTTTCAGGAGAAGAGTCAGCAAGTC
AAATTAAGATGAGAGCTGATCGTTTAAATGTGGCTGAGTCGGGGATGCTTTTGTACCCAGAGACAAATATGGAAAATATT
CGGCATCAGATTGATGAAATAAAGCCGAAATTTTTAGTAATTGATTCTATTCAAACGATGAACGAACCGAGTCTTGATTC
GGTGGTAGGATCAGCTGCCCAGGTCAAAGAAGTTACCAATGAATTAATGAAGATTGCAAAAAATGATGAAATTACAGTTT
TTGTAGTTGGACATGTGACCAAGGAAGGGGCAATTGCTGGGCCAAAGATTTTAGAACATATGGTAGATACTGTTTTGTAT
TTTGAAGGAGATGGGCATCATGCTTATCGAATGTTACGGTCTGTAAAAAATCGTTTTGGAGCCACTAATGAAATGGGGAT
GTTTGAAATGGAAAATGAAGGATTAAAAGAAGTAACTAATCCGTCAGAAATTTTCCTAGATGAACGTTTACCTGATTCAA
CTGGTTCAGCAATTGTAGTGTCGTTAGAAGGAACAAGGCCCATTATGGCTGATATTCAGGCATTAGTAGCGCCCACTGCT
TTTGGTTATGCCAAAAGGACTACTTCTGGACTTGATTATAATCGTGTTGCCCTTTTGTTAGCTGTGCTTGAAAAAAGAGG
TAACTTAATGTTACAGAATCAAGATGCTTTTTTAACGGCAACAGGTGGAATTAAATTAAATGAACCAGCAATTGATTTAG
CTATTGCAATGGCAGTGGCTTCTAGTTATAAAAATGAAGGAATTCCTGCAACAGATTGCTTTGTGGGAGAAATCGGCTTG
ACGGGTGAAGTTAGAAGAGTCAATCAAATTCAAGCAAGAGTTAATGAAGCCGCAAAGATAGGCTTTAAACGAATTTTTAT
TCCCCGTCATAATTTATCAACTGACCTTAAAAATCGAACCGATATTGAAGTAATAGGAATTTCAAGTTTAGCCCAAGCTT
TAAAGCTAGTTTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.079

99.782

0.58
  radA Streptococcus mitis NCTC 12261

58.079

99.782

0.58
  radA Streptococcus pneumoniae Rx1

58.079

99.782

0.58
  radA Streptococcus pneumoniae D39

58.079

99.782

0.58
  radA Streptococcus pneumoniae R6

58.079

99.782

0.58
  radA Streptococcus pneumoniae TIGR4

58.079

99.782

0.58
  radA Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.556

Multiple sequence alignment