Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   FPL17_RS17045 Genome accession   NZ_CP041970
Coordinates   3682963..3683769 (+) Length   268 a.a.
NCBI ID   WP_151716930.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677963..3688769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS17020 (FPL17_17215) - 3678892..3680163 (+) 1272 WP_159886916.1 glycosyltransferase family 4 protein -
  FPL17_RS17025 (FPL17_17220) - 3680201..3680752 (+) 552 WP_159886365.1 phosphatase PAP2 family protein -
  FPL17_RS17030 (FPL17_17225) iscX 3680849..3681049 (+) 201 WP_004652532.1 Fe-S cluster assembly protein IscX -
  FPL17_RS17035 (FPL17_17230) ndk 3681157..3681588 (+) 432 WP_004652531.1 nucleoside-diphosphate kinase -
  FPL17_RS17040 (FPL17_17235) rlmN 3681710..3682945 (+) 1236 WP_005193201.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FPL17_RS17045 (FPL17_17240) pilF 3682963..3683769 (+) 807 WP_151716930.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  FPL17_RS17050 (FPL17_17245) - 3683760..3684557 (+) 798 WP_159886367.1 helix-turn-helix domain-containing protein -
  FPL17_RS17055 (FPL17_17250) ispG 3684580..3685695 (+) 1116 WP_005193196.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  FPL17_RS17060 (FPL17_17255) hisS 3685692..3686984 (+) 1293 WP_159886369.1 histidine--tRNA ligase -
  FPL17_RS17065 (FPL17_17260) - 3687014..3687712 (+) 699 WP_005193190.1 YfgM family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30438.44 Da        Isoelectric Point: 9.7018

>NTDB_id=375106 FPL17_RS17045 WP_151716930.1 3682963..3683769(+) (pilF) [Acinetobacter dispersus strain NCCP 16014]
MNTTRPKTIIATAVGFTLLGLTACQTPSTTLKKDPEKAVQVRTQLAAEYIRNRDLDAAKRSLDQALKIDSRDANANMMMG
ILLQQEGSKTNMEKAEAYFKRAISSEPDNAQARNNYGTYLYQQQRYNDAIEQFTRAGATLGYEQRFQSLENLGRIYLKLG
DVANAEKSFKQALQANRNATISMLELAEIFYLQQNNRDAAQLYEQYVRNVGQKNQGARALWIGLRIARANADQLGMQVLV
NQLRALFPDSPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=375106 FPL17_RS17045 WP_151716930.1 3682963..3683769(+) (pilF) [Acinetobacter dispersus strain NCCP 16014]
TTGAATACCACTCGACCAAAAACGATTATTGCGACAGCTGTTGGGTTTACTTTACTTGGCCTAACAGCATGTCAAACACC
CTCTACAACATTAAAAAAAGATCCAGAAAAAGCAGTGCAAGTCCGTACTCAACTTGCGGCAGAGTATATTCGTAATCGTG
ATTTAGATGCAGCTAAGCGTTCACTTGACCAAGCTTTAAAGATTGATTCCCGTGATGCCAATGCCAACATGATGATGGGG
ATTTTGCTGCAACAAGAAGGTAGCAAGACTAATATGGAAAAAGCAGAAGCTTATTTTAAGCGTGCAATTTCCTCAGAACC
TGATAATGCTCAAGCGCGTAATAATTACGGTACATATTTGTATCAACAGCAACGTTATAATGACGCCATTGAGCAATTTA
CCCGTGCGGGTGCAACTTTAGGCTATGAACAACGTTTTCAGTCGTTGGAAAACCTAGGGCGAATCTATTTGAAATTGGGC
GATGTTGCGAATGCTGAAAAATCATTCAAACAAGCGCTACAAGCGAATCGAAACGCAACCATTTCAATGTTAGAGTTGGC
GGAAATTTTCTATTTGCAACAAAATAATAGAGATGCTGCACAACTATACGAACAATATGTTCGTAACGTGGGACAGAAAA
ACCAAGGTGCTCGCGCGCTTTGGATTGGTCTACGCATTGCTCGAGCGAATGCGGATCAATTAGGAATGCAAGTGTTAGTC
AATCAACTACGTGCGCTATTTCCTGATAGTCCAGAATATCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATG
GAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(41-70)

Tetratricopeptide repeat (TPR_16)

(91-136)

Tetratricopeptide repeat (TPR_16)

(151-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

79.478

100

0.795
  pilF Acinetobacter baylyi ADP1

68.702

97.761

0.672

Multiple sequence alignment