Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FPL17_RS12220 Genome accession   NZ_CP041970
Coordinates   2659400..2661625 (+) Length   741 a.a.
NCBI ID   WP_420867263.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2654400..2666625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12195 (FPL17_12340) - 2655877..2656215 (-) 339 WP_159885298.1 tRNA-binding protein -
  FPL17_RS12200 (FPL17_12345) - 2656461..2656724 (+) 264 WP_159885300.1 DUF2798 domain-containing protein -
  FPL17_RS12205 (FPL17_12350) - 2656780..2657124 (-) 345 WP_004802390.1 hypothetical protein -
  FPL17_RS12210 (FPL17_12355) gspG 2657388..2657963 (-) 576 WP_276529328.1 type II secretion system major pseudopilin GspG -
  FPL17_RS12215 (FPL17_12360) gspF 2657981..2659186 (-) 1206 WP_005192058.1 type II secretion system inner membrane protein GspF -
  FPL17_RS12220 (FPL17_12365) priA 2659400..2661625 (+) 2226 WP_420867263.1 primosomal protein N' Machinery gene
  FPL17_RS12225 (FPL17_12370) - 2661747..2663564 (+) 1818 WP_159885302.1 cation:proton antiporter -
  FPL17_RS12230 (FPL17_12375) hslO 2663684..2664559 (+) 876 WP_005200437.1 Hsp33 family molecular chaperone HslO -
  FPL17_RS12235 (FPL17_12380) - 2664678..2665289 (+) 612 WP_159885304.1 LysE family translocator -
  FPL17_RS12240 (FPL17_12385) - 2665431..2666375 (+) 945 WP_159885306.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84155.10 Da        Isoelectric Point: 8.5581

>NTDB_id=375078 FPL17_RS12220 WP_420867263.1 2659400..2661625(+) (priA) [Acinetobacter dispersus strain NCCP 16014]
MPTENSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIIIEKVDPNEVFTGQFKLKAITELLD
QETILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKITPHEDPASLLKRSQKQYDAYQVLKLHPHG
TTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKAQHQYQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PQLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
VDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHHEVIRVDRDSTSKVGSWQKIYDRIQQNKPNILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADRKIAML
PPYRYAVLVRVESKDRDYSQQFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSSDRAKLHFYLRQWWQHV
VHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=375078 FPL17_RS12220 WP_420867263.1 2659400..2661625(+) (priA) [Acinetobacter dispersus strain NCCP 16014]
ATGCCTACCGAAAATTCTAACGCTATTTTGTACCGTATTCGAGTTGCAATACCCGTTTATGTGTATGACACGTTTGACTA
CACGGTCAGTGCTGAGCAGTACGCTCAAGCTCAAATCGGTGCACGTGTCGCGATTTCTTTTGGTCGGCAGAATCTTGTTG
GGATCATTATCGAGAAAGTTGATCCTAACGAAGTATTTACAGGACAATTCAAACTTAAGGCCATCACAGAATTACTTGAT
CAGGAAACCATTCTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCCCAATATTATCAATTCCCGATTGGCGAGGT
GATGCAAAGTGCCCTACCTACCTTATTAAGACAAGGTCGCGCCTTAGATATCCTGTTTCATTTATGGAAGATCACACCGC
ATGAAGACCCAGCCTCCTTATTAAAACGCTCTCAAAAACAATATGATGCTTATCAGGTTTTAAAACTGCATCCACATGGC
ACTACTGAAAACGTGCTCAATCTAAGTGGTGTAGAAACATCAACCCTGAAAGCACTGGAAAAGAAAGGCTTGGTTGAGTG
CTGTCTGGAACCGCATGATTTCACCCCAACACCTGTACAACTGGCGCAAGTGCCTTTGACACCGAACGAAGATCAAAAGA
AAGCAATTCAACAGATTCTCAAAGCACAGCATCAATACCAAGCATTTTTATTGGATGGTTTGACCGGCAGCGGTAAAACT
GAAGTCTATTTGCAAGTCATGTATGAGGTATTAAAACAAGGTAAACAGGTGTTGGTACTGGTGCCTGAAATTGGCCTGAC
GCCTCAAACTGTAGCTCGTTTTAAGTCACGTTTTCATTGTGATGTGGCCTTGCTCCATTCAGGCTTAAATGACTCGAAAC
GCTTACAGGCATGGCAACATGCGCAAACGGGTAAAGCCTCGATTATTATTGGTACACGCTCTGCAATTTACACCCCGCTT
CCTCAGCTTGGTTTAATCATCTTGGATGAGGAGCATGACCTCTCTTACAAACAGCAAGAAGGTTTCCGCTACCATACCCG
TGATGTGGCTTTATATCGTGGTCATTTACAGAACTGCCCTGTCATCCTCGGATCGGCAACACCAAGTATCGACAGTTATC
ATTTAGTGGAGTCAGGCAAATTACATTTGCTTGAACTAAATCAACGTGCGGGCGTGGCTGTACTGCCGAAAATGCATGTG
GTTGATTTAAAAATCGCAAAAAAGAAACACGGACTGAGCCAAACGCTCATCGAACAGATCAAGCATACGTTAGAACGTAA
AGAACAAGTGCTGATCTTTTTAAATCGACGCGGTTATGCGCCGATTCTGATGTGTGAAAGCTGTGGCTGGCAAGCCAACT
GCCCACACTGTGATGCGCACTTTACCCTACATTCACAGCCTTATCATTATTTGCATTGCCATCATTGCGGCACCATCAAT
CGTCTGCCTGATCATTGTCCTGCATGTCAAAAACAAAGCTTAAAAACCATTGGTGCAGGCACAGCAAAACTTGAAGAACA
CCTACAAGAGTTATTCCCTCACCATGAAGTGATTCGGGTCGATCGTGACAGTACCAGCAAAGTGGGTAGCTGGCAGAAAA
TTTATGATCGCATTCAGCAAAATAAACCCAATATTTTATTGGGCACACAAATGCTGGCCAAAGGTCACCATTTCCCACAT
GTGACGCTCGTTGCGATTTTAGATATTGATGCAGGCTTGCTCAGTGTTGACCCACGCGCGCCTGAACGTACCGCACAGCT
GATTGTACAAGTTGCTGGTCGTGCTGGTCGAGGCGAGCATAAAGGCAGTGTCTATTTACAGAGTCTGCGCCCTGATCACC
CGATGTTGACCACTTTAATTGAGCATGACTACCGTACTGTCGCCAAACAAATGCTGGCTGATCGTAAAATCGCGATGTTA
CCACCCTATCGTTATGCAGTATTGGTTCGGGTTGAATCTAAAGATCGGGATTATAGTCAGCAATTCTTAGCGGATATTGC
ACAACAATTACGGACAATGGCTGGAGATTTAGTCGACATTTGGGGACCGATTCCCGCACCGATGGAACGTAAAGCAGGCC
GTTATCGTGCACATATGGTGATTTTGTCTAGCGATCGAGCAAAACTGCATTTTTATTTGCGCCAGTGGTGGCAACACGTC
GTACACTTACCTCGCCAGCATCTACTGAGGCTATCGATTGATGTTGATCCGCAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Helicase conserved C-terminal domain (Helicase_C)

(530-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.867

99.73

0.816

Multiple sequence alignment