Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FPL13_RS01430 Genome accession   NZ_CP041968
Coordinates   295766..296689 (+) Length   307 a.a.
NCBI ID   WP_049514159.1    Uniprot ID   A0A7L8W3M5
Organism   Streptococcus sp. KS 6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 290766..301689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL13_RS01415 (FPL13_01450) - 292258..293753 (+) 1496 Protein_285 ABC transporter permease -
  FPL13_RS01420 (FPL13_01455) amiD 293753..294679 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  FPL13_RS01425 (FPL13_01460) amiE 294688..295755 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  FPL13_RS01430 (FPL13_01465) amiF 295766..296689 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator
  FPL13_RS01435 (FPL13_01470) - 296832..297668 (+) 837 WP_106388163.1 Cof-type HAD-IIB family hydrolase -
  FPL13_RS01440 (FPL13_01475) - 297728..298693 (-) 966 WP_049514156.1 LacI family DNA-binding transcriptional regulator -
  FPL13_RS01445 (FPL13_01480) - 298674..300131 (-) 1458 WP_049514154.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34860.11 Da        Isoelectric Point: 6.7833

>NTDB_id=374990 FPL13_RS01430 WP_049514159.1 295766..296689(+) (amiF) [Streptococcus sp. KS 6]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAKTEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=374990 FPL13_RS01430 WP_049514159.1 295766..296689(+) (amiF) [Streptococcus sp. KS 6]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATTAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCACTTATTTAAAGATGAAGAAGAGCGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACGCGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCCTTGGACGTGTCTGTGCGGGC
GCAAGTTTTAAACCTACTGAAAAAATTCCAAAAAGAATTAGGTTTAACTTACCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTAATTTATAAGGGTGTGATTGTCGAAGTAGCTAAAACAGAAGAACTCTTTAAC
AATCCGATTCATCCTTATACTCAGTCTTTATTATCAGCTGTGCCAATTCCAGACCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W3M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment