Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FPL13_RS00565 Genome accession   NZ_CP041968
Coordinates   95018..96436 (+) Length   472 a.a.
NCBI ID   WP_106388356.1    Uniprot ID   -
Organism   Streptococcus sp. KS 6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 90018..101436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL13_RS00540 (FPL13_00560) galU 90381..91280 (-) 900 WP_049513913.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FPL13_RS00545 (FPL13_00565) - 91309..92325 (-) 1017 WP_049513912.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FPL13_RS00550 (FPL13_00575) - 92577..93266 (+) 690 WP_049513910.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FPL13_RS00555 (FPL13_00580) - 93490..94521 (+) 1032 WP_049513909.1 S66 peptidase family protein -
  FPL13_RS00560 (FPL13_00585) - 94615..95058 (+) 444 WP_003029453.1 dUTP diphosphatase -
  FPL13_RS00565 (FPL13_00590) radA 95018..96436 (+) 1419 WP_106388356.1 DNA repair protein RadA Machinery gene
  FPL13_RS09845 - 96737..97015 (+) 279 WP_264953627.1 hypothetical protein -
  FPL13_RS00575 (FPL13_00600) - 97072..98691 (+) 1620 WP_192208631.1 BglG family transcription antiterminator -
  FPL13_RS00580 (FPL13_00605) - 98717..99169 (+) 453 WP_049513916.1 PTS sugar transporter subunit IIA -
  FPL13_RS00585 (FPL13_00610) - 99192..99470 (+) 279 WP_003033436.1 PTS sugar transporter subunit IIB -
  FPL13_RS00590 (FPL13_00615) - 99495..100837 (+) 1343 Protein_116 PTS galactitol transporter subunit IIC -
  FPL13_RS00595 (FPL13_00620) - 100838..101020 (+) 183 WP_049513903.1 hypothetical protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51423.29 Da        Isoelectric Point: 6.1042

>NTDB_id=374976 FPL13_RS00565 WP_106388356.1 95018..96436(+) (radA) [Streptococcus sp. KS 6]
MVCGQVVLEALGIKKEESIIAKKKATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVKVTEVKNARVSLTGEKSRPMKLAE
VTSIDVNRTKTDMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIQPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLCFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPKTIEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=374976 FPL13_RS00565 WP_106388356.1 95018..96436(+) (radA) [Streptococcus sp. KS 6]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCGACATT
TGTTTGTCAAAATTGTGAATATCATTCCCCCAAGTATTTAGGGCGCTGTCCTAACTGTGGGGCTTGGTCGTCCTTTGTCG
AAGAGGTCAAAGTTACGGAGGTTAAGAATGCGCGTGTTTCTCTGACAGGGGAAAAAAGTCGACCGATGAAGTTAGCAGAG
GTGACTTCTATTGATGTCAACCGTACCAAGACAGATATGGAAGAGTTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCCGGCATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AAGGAACGGTCTTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTGCGCGCGGAACGTTTAGGCGATATTGAC
AGTGAGTTTTATCTCTATGCGGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATTCAGCCTGATTTTTTGAT
TATAGATTCCATCCAGACGATTCTATCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCGCAAGTGCGAGAAGTGACAG
CGGAGCTGATGCAGCTGGCAAAAACCAACAATATTGCCACCTTTATCGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACTTTGGAACATATGGTGGATACAGTACTTTGTTTTGAGGGTGAGCGTCAACATACTTTTCGTATTTTGCG
GGCAGTCAAAAACCGCTTCGGCTCTACGAATGAAATCGGCATTTTTGAGATGCAGTCAGGTGGTCTGGTTGAAGTACTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGGGCGACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGATTT
CAATCGTGTTAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTAGATGAGCCAGCTATTGACTTAGCTGTTGCCGTTGCAATTGCTTCGAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCAAAA
CTATTGAAGTTATTGGTGTAACAACGATTGGAGAAGTATTGAAGAAGGTGTTTGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(379-444)

AAA domain (AAA_25)

(80-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

92.035

95.763

0.881
  radA Streptococcus pneumoniae D39

92.035

95.763

0.881
  radA Streptococcus pneumoniae R6

92.035

95.763

0.881
  radA Streptococcus pneumoniae TIGR4

92.035

95.763

0.881
  radA Streptococcus mitis NCTC 12261

91.814

95.763

0.879
  radA Streptococcus mitis SK321

91.814

95.763

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

96.822

0.608

Multiple sequence alignment