Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   G8B38_RS06995 Genome accession   NZ_CP049694
Coordinates   1384816..1385424 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain ABC122     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379816..1390424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B38_RS06965 (G8B38_07005) - 1380063..1380545 (+) 483 WP_021299075.1 S-ribosylhomocysteine lyase -
  G8B38_RS06970 (G8B38_07010) - 1380690..1382159 (-) 1470 WP_002983629.1 cell division site-positioning protein MapZ family protein -
  G8B38_RS06975 (G8B38_07015) - 1382173..1383327 (-) 1155 WP_011528863.1 class I SAM-dependent RNA methyltransferase -
  G8B38_RS06985 (G8B38_07025) gpsB 1383772..1384098 (-) 327 WP_002983626.1 cell division regulator GpsB -
  G8B38_RS06990 (G8B38_07030) - 1384220..1384735 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  G8B38_RS06995 (G8B38_07035) recU 1384816..1385424 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  G8B38_RS07000 (G8B38_07040) pbp1a 1385411..1387576 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  G8B38_RS07005 (G8B38_07045) pepC 1388043..1389380 (-) 1338 WP_011528864.1 aminopeptidase C -
  G8B38_RS07010 (G8B38_07050) nadE 1389565..1390389 (-) 825 WP_021299057.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=374903 G8B38_RS06995 WP_002983622.1 1384816..1385424(+) (recU) [Streptococcus pyogenes strain ABC122]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=374903 G8B38_RS06995 WP_002983622.1 1384816..1385424(+) (recU) [Streptococcus pyogenes strain ABC122]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTCGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5