Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSEL_RS10665 Genome accession   NC_014219
Coordinates   2321248..2321856 (+) Length   202 a.a.
NCBI ID   WP_013173017.1    Uniprot ID   -
Organism   [Bacillus] selenitireducens MLS10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2316248..2326856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS10630 (Bsel_2084) - 2317300..2318031 (+) 732 WP_013173010.1 metallophosphoesterase -
  BSEL_RS10635 (Bsel_2085) - 2318094..2318522 (-) 429 WP_013173011.1 TlpA disulfide reductase family protein -
  BSEL_RS10640 (Bsel_2086) - 2318529..2318837 (-) 309 WP_013173012.1 thioredoxin family protein -
  BSEL_RS10645 (Bsel_2087) - 2318855..2319421 (-) 567 WP_013173013.1 cysteine hydrolase family protein -
  BSEL_RS10650 (Bsel_2088) cbpA 2319579..2320214 (+) 636 WP_232970455.1 cyclic di-AMP binding protein CbpA -
  BSEL_RS10655 (Bsel_2089) - 2320287..2320751 (-) 465 WP_013173015.1 TcaA NTF2-like domain-containing protein -
  BSEL_RS10660 (Bsel_2090) - 2320741..2321109 (-) 369 WP_013173016.1 YppE family protein -
  BSEL_RS10665 (Bsel_2091) recU 2321248..2321856 (+) 609 WP_013173017.1 Holliday junction resolvase RecU Machinery gene
  BSEL_RS10670 (Bsel_2092) - 2321889..2324519 (+) 2631 WP_013173018.1 PBP1A family penicillin-binding protein -
  BSEL_RS10675 (Bsel_2093) nth 2324604..2325257 (-) 654 WP_013173019.1 endonuclease III -
  BSEL_RS10680 (Bsel_2094) - 2325261..2325974 (-) 714 WP_013173020.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23369.60 Da        Isoelectric Point: 9.5345

>NTDB_id=37490 BSEL_RS10665 WP_013173017.1 2321248..2321856(+) (recU) [[Bacillus] selenitireducens MLS10]
MAIRYPNGKKYSEKRILKTKKNVNKKDSRYSNRGMSLEEEINESNQYYIAHGLANIHKKPTPIQIVNVHYPSRSAAVITE
AYFQKASTTDYNGVYKGKYIDFEAKETKNKTSFPLKNFHDHQINHMIDVIKHGGICFSILRFSATGETFLLKAEYILSWY
DQNEDRKSIPKSYIEEHGSLLKQGFLPSIDYLKAVDSMIDCQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=37490 BSEL_RS10665 WP_013173017.1 2321248..2321856(+) (recU) [[Bacillus] selenitireducens MLS10]
ATGGCGATTCGATATCCAAACGGAAAAAAATATTCGGAAAAACGAATCCTTAAGACAAAAAAGAACGTCAATAAAAAAGA
TAGCAGATACAGTAATCGCGGAATGAGTCTCGAAGAAGAAATCAATGAGTCAAATCAGTATTATATTGCACATGGATTAG
CGAACATTCACAAAAAACCGACGCCGATCCAAATCGTGAACGTGCATTATCCAAGCCGAAGCGCTGCAGTTATTACAGAG
GCATATTTTCAGAAAGCCTCTACCACTGATTATAATGGCGTATACAAAGGAAAATACATCGACTTTGAAGCGAAAGAAAC
GAAAAATAAAACCAGCTTTCCGTTAAAAAACTTTCACGATCACCAGATTAATCATATGATCGATGTGATCAAACACGGCG
GGATCTGTTTTTCAATTCTCCGTTTTTCCGCAACCGGTGAAACCTTTCTGCTTAAAGCCGAGTATATTCTGTCATGGTAT
GATCAAAATGAAGACAGGAAGTCGATTCCTAAATCTTATATTGAAGAGCACGGTTCACTTCTCAAACAGGGCTTTCTCCC
GAGTATTGACTATCTGAAAGCAGTCGACAGCATGATTGACTGCCAATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

55.051

98.02

0.54

Multiple sequence alignment