Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSEL_RS10415 Genome accession   NC_014219
Coordinates   2268994..2269278 (+) Length   94 a.a.
NCBI ID   WP_013172966.1    Uniprot ID   -
Organism   [Bacillus] selenitireducens MLS10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2263994..2274278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS10395 (Bsel_2036) gdhA 2264886..2266277 (-) 1392 WP_013172962.1 NADP-specific glutamate dehydrogenase -
  BSEL_RS10400 (Bsel_2037) - 2266422..2267327 (+) 906 WP_013172963.1 LysR substrate-binding domain-containing protein -
  BSEL_RS10405 (Bsel_2038) - 2267421..2267876 (-) 456 WP_155522727.1 hypothetical protein -
  BSEL_RS10410 (Bsel_2039) - 2267965..2268666 (+) 702 WP_013172965.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  BSEL_RS10415 (Bsel_2040) abrB 2268994..2269278 (+) 285 WP_013172966.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSEL_RS10420 (Bsel_2041) - 2269369..2270613 (-) 1245 WP_013172967.1 TraB/GumN family protein -
  BSEL_RS10425 (Bsel_2042) - 2270610..2271023 (-) 414 WP_013172968.1 DUF6773 family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10519.29 Da        Isoelectric Point: 5.1596

>NTDB_id=37489 BSEL_RS10415 WP_013172966.1 2268994..2269278(+) (abrB) [[Bacillus] selenitireducens MLS10]
MKSTGIVRKVDELGRVVIPIELRRTLDIAVKDALEIYVDNDRIILKKYKPNMTCQVTGEVSDDNLSIAGGKIILSPMGAK
EIMNELEDYLAKNQ

Nucleotide


Download         Length: 285 bp        

>NTDB_id=37489 BSEL_RS10415 WP_013172966.1 2268994..2269278(+) (abrB) [[Bacillus] selenitireducens MLS10]
ATGAAATCCACAGGTATTGTAAGAAAAGTTGATGAACTCGGACGCGTTGTTATTCCAATTGAATTGAGAAGAACATTAGA
TATCGCAGTTAAAGATGCCCTTGAAATTTATGTCGACAATGACAGAATCATTTTGAAGAAGTACAAACCAAACATGACAT
GTCAAGTGACAGGGGAAGTGTCTGATGACAATCTGTCCATTGCAGGAGGAAAAATTATTTTAAGTCCAATGGGCGCAAAA
GAAATTATGAATGAGCTTGAAGATTATCTTGCTAAAAATCAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

78.889

95.745

0.755

Multiple sequence alignment