Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   G8B38_RS05130 Genome accession   NZ_CP049694
Coordinates   1000030..1001100 (-) Length   356 a.a.
NCBI ID   WP_002984598.1    Uniprot ID   P0DH45
Organism   Streptococcus pyogenes strain ABC122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995030..1006100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B38_RS05110 (G8B38_05150) citX 995610..996188 (+) 579 WP_021299257.1 citrate lyase holo-[acyl-carrier protein] synthase -
  G8B38_RS05115 (G8B38_05155) - 996203..997597 (+) 1395 WP_021299264.1 oxaloacetate decarboxylase subunit alpha -
  G8B38_RS05120 (G8B38_05160) citC 997707..998759 (-) 1053 WP_011528662.1 [citrate (pro-3S)-lyase] ligase -
  G8B38_RS05125 (G8B38_05165) - 998848..999330 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  G8B38_RS05130 (G8B38_05170) xerS 1000030..1001100 (-) 1071 WP_002984598.1 tyrosine recombinase XerS Machinery gene
  G8B38_RS05135 (G8B38_05175) - 1001574..1002272 (+) 699 WP_011528664.1 helix-turn-helix transcriptional regulator -
  G8B38_RS05140 (G8B38_05180) ffh 1002389..1003951 (-) 1563 WP_021299250.1 signal recognition particle protein -
  G8B38_RS05145 (G8B38_05185) - 1003966..1004298 (-) 333 WP_002989745.1 putative DNA-binding protein -
  G8B38_RS05150 (G8B38_05190) - 1004396..1005094 (-) 699 WP_021299253.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.57 Da        Isoelectric Point: 9.5552

>NTDB_id=374881 G8B38_RS05130 WP_002984598.1 1000030..1001100(-) (xerS) [Streptococcus pyogenes strain ABC122]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=374881 G8B38_RS05130 WP_002984598.1 1000030..1001100(-) (xerS) [Streptococcus pyogenes strain ABC122]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806