Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BSEL_RS09270 Genome accession   NC_014219
Coordinates   2008094..2009332 (+) Length   412 a.a.
NCBI ID   WP_013172740.1    Uniprot ID   D6XU30
Organism   [Bacillus] selenitireducens MLS10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2003094..2014332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS09245 (Bsel_1804) yfmH 2003415..2004713 (+) 1299 WP_013172735.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BSEL_RS09250 (Bsel_1805) ymfI 2004710..2005429 (+) 720 WP_013172736.1 elongation factor P 5-aminopentanone reductase -
  BSEL_RS09255 (Bsel_1806) - 2005563..2006336 (+) 774 WP_013172737.1 DUF3388 domain-containing protein -
  BSEL_RS09260 (Bsel_1807) - 2006353..2007261 (+) 909 WP_041581865.1 RodZ family helix-turn-helix domain-containing protein -
  BSEL_RS09265 (Bsel_1808) pgsA 2007490..2008068 (+) 579 WP_013172739.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BSEL_RS09270 (Bsel_1809) cinA 2008094..2009332 (+) 1239 WP_013172740.1 competence/damage-inducible protein A Machinery gene
  BSEL_RS09275 (Bsel_1810) - 2009357..2010943 (+) 1587 WP_013172741.1 DEAD/DEAH box helicase -
  BSEL_RS09280 (Bsel_1811) recA 2011095..2012153 (+) 1059 WP_013172742.1 recombinase RecA Machinery gene
  BSEL_RS09285 (Bsel_1812) rny 2012667..2014229 (+) 1563 WP_013172743.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45371.79 Da        Isoelectric Point: 4.6539

>NTDB_id=37487 BSEL_RS09270 WP_013172740.1 2008094..2009332(+) (cinA) [[Bacillus] selenitireducens MLS10]
MNAEIVAIGSELLLGQIVNSNASHISKELSYLGIDVYHHVAVGDNPDRLRDVLKQAAARSDLVICTGGLGPTKDDLTKEI
LAGLTGRDLVYDEETEQNIIDYYQKWNRVMPENNRKQAMVIKGSEILPNHHGLSCGMVVPVGKSQVMLLPGPPNELIPMF
RDFALPYLKTMLNVTEEIESRVLRFFDIGESMLAEKLDDLFEAQTNPTMAPLASMGEVMLRLTVKGEDTEKNRAALDELQ
DTILDRIGDYFIGIGETPLVRQVVELLQSRKKTVTAAESLTGGLFSSALTSVQGVSSVFPGSIVCYSNQVKETVLSVPEE
LIQSEGVVSEACARKLAENSRRLFNTDIAISFTGVAGPDELEGHPPGTVFISITDGKRDEVHRLQLAGSRENIQDRTVKY
GCFYLRTFLLNE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=37487 BSEL_RS09270 WP_013172740.1 2008094..2009332(+) (cinA) [[Bacillus] selenitireducens MLS10]
ATGAACGCAGAGATTGTAGCGATTGGCTCCGAGTTATTGCTCGGACAAATTGTGAACAGCAATGCATCACACATTTCCAA
GGAACTATCTTATCTCGGGATCGACGTTTATCATCACGTCGCTGTCGGGGATAATCCGGACAGACTCCGTGATGTACTCA
AGCAGGCAGCAGCCCGTTCTGATCTCGTGATCTGTACAGGCGGATTGGGGCCGACAAAGGATGATCTGACGAAGGAAATA
CTCGCGGGCCTTACCGGCCGGGATCTTGTATACGACGAGGAGACGGAACAGAATATTATCGATTATTATCAAAAGTGGAA
CCGGGTCATGCCTGAGAATAACCGAAAGCAGGCAATGGTTATCAAAGGTTCTGAAATCCTTCCGAATCATCATGGCTTAT
CCTGCGGAATGGTTGTTCCAGTTGGGAAAAGTCAAGTCATGCTCTTACCAGGACCGCCCAACGAACTGATCCCGATGTTC
CGCGATTTTGCACTTCCGTATTTGAAAACGATGTTGAATGTAACCGAGGAGATTGAATCACGAGTATTGCGTTTTTTTGA
TATAGGCGAATCCATGCTTGCTGAAAAGCTTGATGATTTGTTTGAAGCGCAAACGAATCCGACGATGGCACCACTTGCGA
GCATGGGCGAAGTCATGCTCAGGTTAACGGTTAAAGGTGAAGACACTGAAAAAAACCGGGCTGCCTTGGACGAGCTTCAG
GACACGATTCTTGATCGGATTGGCGATTATTTCATCGGTATCGGTGAAACCCCGCTTGTAAGGCAGGTTGTTGAACTTTT
ACAAAGTCGTAAAAAAACCGTCACTGCAGCGGAAAGCCTTACAGGGGGGCTGTTTTCTTCGGCATTAACTTCTGTTCAGG
GAGTATCTTCTGTTTTTCCCGGCTCGATAGTGTGTTATAGTAATCAAGTGAAGGAAACGGTCTTGTCAGTCCCTGAAGAA
CTGATACAGTCCGAGGGTGTTGTGAGTGAAGCATGCGCCCGGAAACTGGCCGAGAACAGCAGAAGACTGTTTAATACCGA
TATCGCCATCAGTTTTACAGGAGTTGCGGGTCCTGATGAACTTGAAGGTCATCCCCCGGGAACCGTATTCATCAGCATTA
CCGATGGAAAGCGGGATGAGGTGCATCGTCTTCAGCTGGCAGGCAGTCGAGAGAATATTCAGGACCGAACGGTGAAATAT
GGCTGTTTCTATTTGCGAACATTTTTGTTAAATGAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6XU30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.98

99.029

0.505
  cinA Streptococcus pneumoniae TIGR4

44.313

100

0.454
  cinA Streptococcus mutans UA159

44.952

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.076

100

0.451
  cinA Streptococcus pneumoniae R6

44.076

100

0.451
  cinA Streptococcus mitis SK321

43.839

100

0.449
  cinA Streptococcus mitis NCTC 12261

43.839

100

0.449
  cinA Streptococcus pneumoniae D39

43.839

100

0.449

Multiple sequence alignment