Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FPB55_RS18625 Genome accession   NZ_CP041933
Coordinates   3994054..3994689 (-) Length   211 a.a.
NCBI ID   WP_009685211.1    Uniprot ID   A0A7W2QUJ4
Organism   Pseudomonas sp. BJP69     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3989054..3999689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPB55_RS18595 (FPB55_18595) murB 3990152..3991171 (-) 1020 WP_009685204.1 UDP-N-acetylmuramate dehydrogenase -
  FPB55_RS18600 (FPB55_18600) - 3991168..3991632 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  FPB55_RS18605 (FPB55_18605) kdsB 3991632..3992396 (-) 765 WP_009685206.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FPB55_RS18610 (FPB55_18610) - 3992393..3992578 (-) 186 WP_003247142.1 Trm112 family protein -
  FPB55_RS18615 (FPB55_18615) lpxK 3992622..3993623 (-) 1002 WP_144188996.1 tetraacyldisaccharide 4'-kinase -
  FPB55_RS18620 (FPB55_18620) - 3993623..3994057 (-) 435 WP_144188998.1 biopolymer transporter ExbD -
  FPB55_RS18625 (FPB55_18625) exbB 3994054..3994689 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FPB55_RS18630 (FPB55_18630) comA 3994919..3997132 (-) 2214 WP_144189000.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FPB55_RS18635 (FPB55_18635) - 3997275..3997787 (+) 513 Protein_3618 DUF2062 domain-containing protein -
  FPB55_RS18640 (FPB55_18640) - 3997791..3998570 (-) 780 WP_009681883.1 ABC transporter permease -
  FPB55_RS18645 (FPB55_18645) - 3998567..3999499 (-) 933 WP_144189004.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=374780 FPB55_RS18625 WP_009685211.1 3994054..3994689(-) (exbB) [Pseudomonas sp. BJP69]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=374780 FPB55_RS18625 WP_009685211.1 3994054..3994689(-) (exbB) [Pseudomonas sp. BJP69]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTCGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCAGCTTCGCGCGTCATTCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2QUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment