Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOV14_RS10545 Genome accession   NZ_CP041784
Coordinates   2192870..2193478 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain IM1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187870..2198478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS10505 (FOV14_10580) - 2188923..2189429 (-) 507 WP_003153536.1 PTS glucose transporter subunit IIA -
  FOV14_RS10510 (FOV14_10585) - 2189568..2189981 (+) 414 WP_069448837.1 hypothetical protein -
  FOV14_RS10515 (FOV14_10590) - 2190011..2190445 (-) 435 WP_003153534.1 YppG family protein -
  FOV14_RS10520 (FOV14_10595) - 2190632..2190814 (+) 183 WP_003153532.1 YppF family protein -
  FOV14_RS10525 (FOV14_10600) - 2190853..2191221 (-) 369 WP_003153529.1 YppE family protein -
  FOV14_RS10530 (FOV14_10605) - 2191267..2191512 (-) 246 WP_014305286.1 DUF5446 family protein -
  FOV14_RS10535 (FOV14_10610) sspM 2191718..2191822 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  FOV14_RS10540 (FOV14_10615) - 2191866..2192828 (-) 963 WP_160249273.1 DUF2515 domain-containing protein -
  FOV14_RS10545 (FOV14_10620) recU 2192870..2193478 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  FOV14_RS10550 (FOV14_10625) - 2193517..2196300 (+) 2784 WP_044053364.1 PBP1A family penicillin-binding protein -
  FOV14_RS10555 (FOV14_10630) - 2196378..2196869 (-) 492 WP_139886917.1 YpoC family protein -
  FOV14_RS10560 (FOV14_10635) nth 2196866..2197525 (-) 660 WP_240679733.1 endonuclease III -
  FOV14_RS10565 (FOV14_10640) dnaD 2197544..2198242 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=374296 FOV14_RS10545 WP_003153521.1 2192870..2193478(+) (recU) [Bacillus velezensis strain IM1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=374296 FOV14_RS10545 WP_003153521.1 2192870..2193478(+) (recU) [Bacillus velezensis strain IM1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
CTACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment