Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   FOV14_RS06960 Genome accession   NZ_CP041784
Coordinates   1366182..1366778 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain IM1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361182..1371778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS06930 (FOV14_06980) - 1361396..1361851 (+) 456 WP_095315365.1 flavodoxin -
  FOV14_RS06935 (FOV14_06985) dapD 1361933..1362643 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  FOV14_RS06940 (FOV14_06990) - 1362714..1363838 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  FOV14_RS06945 (FOV14_06995) - 1363899..1364144 (+) 246 WP_003154596.1 YkuS family protein -
  FOV14_RS06950 (FOV14_07000) - 1364178..1364984 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  FOV14_RS06955 (FOV14_07005) - 1365272..1365730 (+) 459 WP_057079997.1 TlpA disulfide reductase family protein -
  FOV14_RS06960 (FOV14_07010) rok 1366182..1366778 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  FOV14_RS06965 (FOV14_07015) - 1366799..1367791 (-) 993 WP_014304925.1 hypothetical protein -
  FOV14_RS06970 (FOV14_07020) - 1367937..1368539 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  FOV14_RS06975 (FOV14_07025) - 1368591..1369610 (+) 1020 WP_057079980.1 molybdopterin-synthase adenylyltransferase MoeB -
  FOV14_RS06980 (FOV14_07030) glp 1369628..1370920 (+) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  FOV14_RS06985 (FOV14_07035) mobB 1370881..1371402 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=374289 FOV14_RS06960 WP_003154591.1 1366182..1366778(+) (rok) [Bacillus velezensis strain IM1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=374289 FOV14_RS06960 WP_003154591.1 1366182..1366778(+) (rok) [Bacillus velezensis strain IM1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment