Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOV14_RS01795 Genome accession   NZ_CP041784
Coordinates   361786..362223 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain IM1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356786..367223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS01755 (FOV14_01780) - 357366..357491 (-) 126 Protein_305 hypothetical protein -
  FOV14_RS01760 (FOV14_01785) - 357644..358846 (+) 1203 WP_024084872.1 GTP-binding protein -
  FOV14_RS01765 (FOV14_01790) - 358911..360047 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  FOV14_RS01770 (FOV14_01795) - 360062..360496 (+) 435 WP_057080003.1 RDD family protein -
  FOV14_RS01775 (FOV14_01800) - 360568..360888 (+) 321 WP_044053437.1 YckD family protein -
  FOV14_RS01785 (FOV14_01810) - 361107..361325 (+) 219 Protein_310 family 1 glycosylhydrolase -
  FOV14_RS01790 (FOV14_01815) nin/comJ 361366..361764 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  FOV14_RS01795 (FOV14_01820) nucA/comI 361786..362223 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FOV14_RS01800 (FOV14_01825) hxlB 362582..363139 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  FOV14_RS01805 (FOV14_01830) hxlA 363136..363771 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  FOV14_RS01810 (FOV14_01835) - 364003..364365 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=374264 FOV14_RS01795 WP_003156588.1 361786..362223(-) (nucA/comI) [Bacillus velezensis strain IM1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=374264 FOV14_RS01795 WP_003156588.1 361786..362223(-) (nucA/comI) [Bacillus velezensis strain IM1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment