Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FPJ27_RS29515 Genome accession   NZ_CP041779
Coordinates   2262358..2263734 (-) Length   458 a.a.
NCBI ID   WP_072437254.1    Uniprot ID   A0A2S8IY38
Organism   Burkholderia sp. MS455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2257358..2268734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPJ27_RS29495 (FPJ27_30410) cls 2257766..2259214 (+) 1449 WP_072437079.1 cardiolipin synthase -
  FPJ27_RS29500 (FPJ27_30415) - 2259242..2259721 (-) 480 WP_011549528.1 glutathione peroxidase -
  FPJ27_RS29505 (FPJ27_30420) - 2259858..2261789 (+) 1932 WP_204423684.1 ATP-binding cassette domain-containing protein -
  FPJ27_RS29510 (FPJ27_30425) - 2261945..2262211 (-) 267 WP_072437077.1 DUF2866 domain-containing protein -
  FPJ27_RS29515 (FPJ27_30430) radA 2262358..2263734 (-) 1377 WP_072437254.1 DNA repair protein RadA Machinery gene
  FPJ27_RS29520 (FPJ27_30435) alr 2263746..2264816 (-) 1071 WP_034184727.1 alanine racemase -
  FPJ27_RS29525 (FPJ27_30440) lplT 2265035..2266342 (+) 1308 WP_072437076.1 lysophospholipid transporter LplT -
  FPJ27_RS29530 (FPJ27_30445) thiD 2266401..2267210 (+) 810 WP_204423685.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FPJ27_RS29535 (FPJ27_30450) - 2267229..2268194 (-) 966 WP_204423687.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48865.29 Da        Isoelectric Point: 6.7606

>NTDB_id=374210 FPJ27_RS29515 WP_072437254.1 2262358..2263734(-) (radA) [Burkholderia sp. MS455]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGTPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=374210 FPJ27_RS29515 WP_072437254.1 2262358..2263734(-) (radA) [Burkholderia sp. MS455]
GTGGCCAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGGCAGACCCCGAAGTGGCAGGGGCAGTGTCCGTCGTG
CCAGGCCTGGAATACGCTGGTGGAATCGGTCGCCGAGTCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCCGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAACGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTACGCCGGCGGCCGAGCTGCAGCTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTTCCGGCTTGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGTCCGCTGCTCGTCGAGATCCAGGCGCTGGTCGATACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGACTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGCGAGGCGGCGAAGCTCGGTTTCACGGCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAACAGCCGATCGAAGGATTGAACGTGATGGCTGTCGAGCGGATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S8IY38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467

Multiple sequence alignment