Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TMATH_RS09810 Genome accession   NC_014209
Coordinates   1959083..1960456 (-) Length   457 a.a.
NCBI ID   WP_012995942.1    Uniprot ID   D3T4U8
Organism   Thermoanaerobacter mathranii subsp. mathranii str. A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1954083..1965456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMATH_RS09785 (Tmath_1945) ispF 1954591..1955088 (-) 498 WP_198002289.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  TMATH_RS09790 (Tmath_1946) - 1955081..1956325 (-) 1245 WP_013150816.1 lipase/acyltransferase domain-containing protein -
  TMATH_RS09795 (Tmath_1947) ispD 1956382..1957074 (-) 693 WP_013150817.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  TMATH_RS09800 (Tmath_1948) - 1957156..1958259 (-) 1104 WP_012995940.1 PIN/TRAM domain-containing protein -
  TMATH_RS09805 (Tmath_1949) - 1958542..1958937 (+) 396 WP_012995941.1 hypothetical protein -
  TMATH_RS09810 (Tmath_1950) radA 1959083..1960456 (-) 1374 WP_012995942.1 DNA repair protein RadA Machinery gene
  TMATH_RS09815 (Tmath_1951) - 1960511..1961776 (-) 1266 WP_013150818.1 Nramp family divalent metal transporter -
  TMATH_RS09820 (Tmath_1952) - 1962066..1964339 (-) 2274 WP_013150819.1 alpha-amylase family glycosyl hydrolase -
  TMATH_RS09825 (Tmath_1953) - 1964448..1965338 (-) 891 WP_013150820.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 51449.40 Da        Isoelectric Point: 6.3295

>NTDB_id=37414 TMATH_RS09810 WP_012995942.1 1959083..1960456(-) (radA) [Thermoanaerobacter mathranii subsp. mathranii str. A3]
MAKSNTKFVCRECGFESSKWMGRCPNCESWNSFEEEVIENLKNFKITKNTSQIYLLQDVTFSEEERIRTGIEEFDRVLGG
GIVKGSLVLIGGDPGIGKSTLLFQVAGNISDEKVVLYVSGEESIQQIKLRADRILKEKQRIYLLCETNIEEIERKINDIN
PNFVIIDSIQTMYTEESQTIPGSISQIRQVTQKLMEISKQKDISIFLIGHVTKEGAIAGPKVLEHMVDTVLYFEGDRTQS
FRVLRAVKNRFGATHEIGVFDMEEDGLREIRNPSEFILSNRPKNVPGTAVVSSIQGTRPILMEVQSLICKTSFGVPRRMA
TGFDYNRFILLLAVMEKRLGINLSQFDAYVNVAGGMKIQEPAADLGIIVSSLSGYFNIPIPEDVCFIGEVGLTGEVRGVS
NIDKRISEAQKMGFSQVFIPDMKTKEIKKFENTKITKIRDIKEIVDFLKKIEQKASP

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=37414 TMATH_RS09810 WP_012995942.1 1959083..1960456(-) (radA) [Thermoanaerobacter mathranii subsp. mathranii str. A3]
ATGGCCAAATCAAATACAAAATTTGTATGTAGAGAGTGTGGTTTTGAAAGTAGTAAATGGATGGGAAGATGTCCTAATTG
TGAAAGCTGGAATTCTTTTGAGGAAGAAGTTATAGAGAATCTAAAAAATTTTAAAATAACTAAAAATACATCTCAAATAT
ATCTTCTTCAAGATGTAACTTTTTCAGAAGAGGAAAGGATAAGGACAGGGATTGAAGAGTTTGACAGGGTTTTAGGTGGC
GGAATTGTAAAGGGGTCTCTTGTTTTGATAGGTGGTGACCCAGGAATTGGGAAGTCTACTTTGTTATTTCAGGTAGCAGG
GAATATTTCTGATGAAAAAGTAGTTCTTTACGTGTCAGGAGAGGAATCAATTCAGCAGATTAAATTGAGAGCAGATAGAA
TTTTGAAAGAAAAACAGCGAATATATCTTTTGTGTGAGACAAATATAGAGGAGATAGAGAGAAAAATTAATGACATAAAT
CCAAATTTTGTTATTATTGATTCTATACAGACGATGTACACTGAGGAAAGTCAGACAATACCGGGTAGTATTTCTCAGAT
AAGGCAAGTGACTCAAAAGTTGATGGAGATTTCAAAGCAAAAAGACATAAGTATTTTTTTGATAGGACATGTTACAAAAG
AAGGAGCAATAGCGGGACCTAAAGTTTTGGAACATATGGTAGACACGGTTCTATATTTTGAAGGAGATAGAACCCAGTCT
TTTAGGGTATTGCGGGCTGTCAAAAACCGCTTTGGCGCAACTCACGAAATTGGAGTTTTTGATATGGAGGAGGATGGGCT
CCGCGAAATACGAAATCCTTCTGAATTTATTCTTTCAAACAGGCCTAAAAATGTTCCGGGGACTGCGGTTGTGTCTTCCA
TTCAAGGGACGAGGCCAATTTTAATGGAAGTGCAGTCTTTGATATGTAAGACTAGTTTTGGAGTACCGAGAAGAATGGCT
ACTGGATTTGACTACAATCGCTTTATATTGCTTTTAGCAGTTATGGAAAAAAGACTTGGTATAAATCTTTCGCAATTTGA
TGCATATGTAAATGTGGCGGGAGGAATGAAAATTCAAGAACCAGCTGCTGACCTGGGGATAATTGTGTCTTCTCTTTCTG
GATATTTTAATATACCTATTCCTGAAGATGTTTGTTTTATAGGAGAGGTGGGATTGACAGGAGAGGTTAGAGGAGTTAGT
AATATAGATAAACGAATAAGTGAAGCACAAAAGATGGGATTTTCTCAAGTTTTTATCCCTGACATGAAGACAAAAGAGAT
AAAAAAGTTTGAGAATACAAAGATTACTAAAATAAGGGATATAAAGGAGATTGTGGATTTTTTAAAAAAAATAGAACAAA
AAGCATCTCCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-215)

Subunit ChlI of Mg-chelatase (ChlI)

(341-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3T4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52

98.468

0.512
  radA Streptococcus mitis NCTC 12261

50.22

99.344

0.499
  radA Streptococcus pneumoniae Rx1

50.22

99.344

0.499
  radA Streptococcus pneumoniae D39

50.22

99.344

0.499
  radA Streptococcus pneumoniae R6

50.22

99.344

0.499
  radA Streptococcus pneumoniae TIGR4

50.22

99.344

0.499
  radA Streptococcus mitis SK321

50.22

99.344

0.499

Multiple sequence alignment