Detailed information NTG0374036

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: FNS63_RS12030
• Genome accession: NZ_CP041770
• Coordinates: 2468008..2469153 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain DH8030
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2463008..2474153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNS63_RS12010 (FNS63_12005)	-	2463483..2464199 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
FNS63_RS12015 (FNS63_12010)	narK	2464297..2465487 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
FNS63_RS12020 (FNS63_12015)	argS	2465621..2467291 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
FNS63_RS12025 (FNS63_12020)	-	2467288..2467716 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
FNS63_RS12030 (FNS63_12025)	rapF	2468008..2469153 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
FNS63_RS12035 (FNS63_12030)	-	2469137..2469256 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
FNS63_RS12040 (FNS63_12035)	speB	2469379..2469816 (-)	438	Protein_2368	agmatinase	-
FNS63_RS12045 (FNS63_12040)	-	2469978..2470535 (-)	558	WP_149915874.1	DUF885 family protein	-
FNS63_RS12050 (FNS63_12045)	-	2471134..2471400 (-)	267	WP_149915875.1	hypothetical protein	-
FNS63_RS12055 (FNS63_12050)	-	2471401..2472741 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
FNS63_RS12060 (FNS63_12055)	-	2472738..2473793 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=374036 FNS63_RS12030 WP_024085922.1 2468008..2469153(+) (rapF) [Bacillus amyloliquefaciens strain DH8030]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=374036 FNS63_RS12030 WP_024085922.1 2468008..2469153(+) (rapF) [Bacillus amyloliquefaciens strain DH8030]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533