Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   FNS63_RS01245 Genome accession   NZ_CP041770
Coordinates   236139..236603 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain DH8030     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 231139..241603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS63_RS01225 (FNS63_01225) - 231619..233439 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  FNS63_RS01230 (FNS63_01230) - 233415..234634 (-) 1220 Protein_249 aminotransferase A -
  FNS63_RS19960 - 234835..234996 (-) 162 WP_007409608.1 hypothetical protein -
  FNS63_RS01240 (FNS63_01240) cheV 235185..236096 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  FNS63_RS01245 (FNS63_01245) kre 236139..236603 (-) 465 WP_003154622.1 YkyB family protein Regulator
  FNS63_RS01250 (FNS63_01250) - 236726..238018 (-) 1293 WP_024085236.1 MFS transporter -
  FNS63_RS01255 (FNS63_01255) - 238094..238588 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  FNS63_RS01260 (FNS63_01260) - 238663..239526 (-) 864 WP_024085238.1 metallophosphoesterase -
  FNS63_RS01265 (FNS63_01265) fadH 239670..240434 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  FNS63_RS20155 - 240544..241089 (+) 546 Protein_257 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=373994 FNS63_RS01245 WP_003154622.1 236139..236603(-) (kre) [Bacillus amyloliquefaciens strain DH8030]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=373994 FNS63_RS01245 WP_003154622.1 236139..236603(-) (kre) [Bacillus amyloliquefaciens strain DH8030]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment