Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FO446_RS27810 Genome accession   NZ_CP041767
Coordinates   5907459..5908412 (-) Length   317 a.a.
NCBI ID   WP_237899617.1    Uniprot ID   -
Organism   Brevibacillus brevis strain B011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5902459..5913412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO446_RS27785 (FO446_27820) - 5902858..5903721 (+) 864 WP_173610278.1 ABC transporter ATP-binding protein -
  FO446_RS27790 (FO446_27825) - 5903926..5904582 (+) 657 WP_173610277.1 DJ-1/PfpI family protein -
  FO446_RS27795 (FO446_27830) - 5904672..5905661 (-) 990 WP_304502553.1 siderophore ABC transporter substrate-binding protein -
  FO446_RS27800 (FO446_27835) - 5905766..5906524 (-) 759 WP_173610276.1 ABC transporter ATP-binding protein -
  FO446_RS27805 (FO446_27840) - 5906521..5907462 (-) 942 WP_237899615.1 iron chelate uptake ABC transporter family permease subunit -
  FO446_RS27810 (FO446_27845) ceuB 5907459..5908412 (-) 954 WP_237899617.1 ABC transporter permease Machinery gene
  FO446_RS27815 (FO446_27850) - 5908663..5909427 (-) 765 WP_221867270.1 DUF4097 family beta strand repeat-containing protein -
  FO446_RS27820 (FO446_27855) - 5909626..5910300 (+) 675 WP_087350557.1 Crp/Fnr family transcriptional regulator -
  FO446_RS27825 (FO446_27860) - 5910388..5910750 (+) 363 WP_015893867.1 carboxymuconolactone decarboxylase family protein -
  FO446_RS27830 (FO446_27865) - 5910945..5911301 (+) 357 WP_173610273.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35133.31 Da        Isoelectric Point: 9.6750

>NTDB_id=373983 FO446_RS27810 WP_237899617.1 5907459..5908412(-) (ceuB) [Brevibacillus brevis strain B011]
MKKRYLVVALILLSFVSLFIGVKDISPWDLFNLTDDKVQVLWISRIPRVISIIIAGVSMSIAGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLLVFVDASSWVKLLVAFAFALFGTFVFMKILERIKFKDSIFIPLVGLMFGNIVGSITTFFAYKHDLM
QNMSAWLHGDFSTIMKGSYELLYISIPLVIIAYLYANKFTIAGMGEEFAINLGLNYKHVVNIGLVIVACVTSVVILTVGT
IPFLGLIIPNLVTIYLGDNLKKSLSHTALLGAVFVLACDILGRLIIFPYEISIGMMVGVIGSGIFVYLLMRRKAYEQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=373983 FO446_RS27810 WP_237899617.1 5907459..5908412(-) (ceuB) [Brevibacillus brevis strain B011]
ATGAAAAAGAGATATTTGGTTGTAGCACTGATTTTGCTATCGTTCGTTTCACTTTTTATTGGCGTGAAAGATATATCTCC
GTGGGATCTGTTCAATCTCACAGATGACAAAGTGCAAGTGCTATGGATTAGCAGGATTCCGCGTGTGATCAGTATTATCA
TCGCAGGGGTCAGCATGAGTATCGCCGGATTGATCATGCAACAGCTAACCCGAAACAAGTTCGTTTCTCCGACGACAGCA
GGGACAGAGGACTCCGTTCGATTCGGAATATTGGTTTCACTCTTGGTATTCGTCGATGCGAGCTCCTGGGTGAAGCTACT
CGTTGCTTTTGCATTTGCTCTCTTTGGAACCTTTGTCTTTATGAAGATTCTCGAAAGAATCAAATTTAAAGACTCCATTT
TCATCCCGTTAGTGGGACTGATGTTTGGAAACATCGTCGGGTCCATCACGACGTTTTTCGCTTATAAGCATGACCTGATG
CAAAACATGTCTGCTTGGTTGCATGGAGATTTCTCCACCATTATGAAAGGCAGCTATGAGCTTTTGTACATAAGCATTCC
GCTGGTGATTATCGCTTACTTGTATGCGAACAAGTTTACCATTGCCGGAATGGGTGAAGAGTTCGCCATCAACCTCGGGT
TGAACTACAAGCATGTCGTCAACATTGGACTGGTCATTGTCGCTTGTGTGACCTCGGTAGTTATTCTCACAGTAGGGACA
ATCCCGTTTTTGGGGCTGATCATTCCCAACCTGGTTACGATCTACCTGGGAGATAACCTGAAAAAAAGCTTATCTCATAC
CGCTTTGCTTGGCGCGGTGTTTGTACTTGCTTGTGATATCCTGGGACGCCTCATCATCTTCCCATACGAGATTTCCATCG
GCATGATGGTTGGGGTCATTGGCAGCGGGATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment