Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G7B60_RS08650 Genome accession   NZ_CP049353
Coordinates   1806325..1807752 (-) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain T28R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801325..1812752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7B60_RS08620 (G7B60_08620) yeeZ 1801380..1802204 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  G7B60_RS08625 (G7B60_08625) yeeY 1802250..1803179 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G7B60_RS08630 (G7B60_08630) yoeI 1803394..1803456 (+) 63 WP_010723108.1 membrane protein YoeI -
  G7B60_RS08635 (G7B60_08635) plaP 1803446..1804804 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G7B60_RS08640 (G7B60_08640) tsuA 1804983..1806041 (+) 1059 WP_053276361.1 thiosulfate utilization transporter TsuA/YeeE -
  G7B60_RS08645 (G7B60_08645) tsuB 1806055..1806282 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G7B60_RS08650 (G7B60_08650) sbcB 1806325..1807752 (-) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  G7B60_RS08655 (G7B60_08655) dacD 1807961..1809127 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G7B60_RS08660 (G7B60_08660) sbmC 1809246..1809719 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  G7B60_RS08665 (G7B60_08665) yeeA 1809918..1810976 (+) 1059 WP_001200891.1 FUSC family protein -
  G7B60_RS08670 (G7B60_08670) tmaR 1811148..1811477 (+) 330 WP_000450409.1 DUF496 family protein -
  G7B60_RS08675 (G7B60_08675) - 1811578..1811769 (-) 192 Protein_1714 EutP/PduV family microcompartment system protein -
  G7B60_RS08680 (G7B60_08680) cobU 1811936..1812481 (+) 546 WP_053276360.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=373841 G7B60_RS08650 WP_000980620.1 1806325..1807752(-) (sbcB) [Escherichia coli strain T28R]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=373841 G7B60_RS08650 WP_000980620.1 1806325..1807752(-) (sbcB) [Escherichia coli strain T28R]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577

Multiple sequence alignment