Detailed information NTG0373828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G7B60_RS04640
• Genome accession: NZ_CP049353
• Coordinates: 982395..983387 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain T28R
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 977395..988387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7B60_RS04610 (G7B60_04610)	ispD	977456..978166 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G7B60_RS04615 (G7B60_04615)	ispF	978166..978645 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G7B60_RS04620 (G7B60_04620)	truD	978642..979691 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G7B60_RS04625 (G7B60_04625)	surE	979672..980433 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G7B60_RS04630 (G7B60_04630)	pcm	980427..981053 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G7B60_RS04635 (G7B60_04635)	nlpD	981238..982332 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
G7B60_RS04640 (G7B60_04640)	rpoS	982395..983387 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G7B60_RS04645 (G7B60_04645)	ygbN	983481..984845 (-)	1365	WP_021547117.1	GntP family transporter	-
G7B60_RS04650 (G7B60_04650)	ygbM	984934..985710 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
G7B60_RS04655 (G7B60_04655)	ygbL	985715..986353 (-)	639	WP_001278994.1	aldolase	-
G7B60_RS04660 (G7B60_04660)	otnK	986350..987599 (-)	1250	Protein_924	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=373828 G7B60_RS04640 WP_000081550.1 982395..983387(+) (rpoS) [Escherichia coli strain T28R]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=373828 G7B60_RS04640 WP_000081550.1 982395..983387(+) (rpoS) [Escherichia coli strain T28R]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715